-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1631

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1406, 1667
Sorry, prediction snap_scaffold_1631-snap.1-T1 fails validation.
(CCT)	 AG	1406-1667	GT	AAG
-recovered snap_scaffold_1631-snap.1-T1, internal, 1406, 1667
Valid prediction for GlimmerHMM_glimmerT_62751-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62751-T1 1406-1671-terminal-1 is invalid.
Couldn't classify 937, 963
Couldn't classify 2087, 2094
Sorry, prediction GeneMark_model.109557_t fails validation.
(GAG)	 AG	937-963	GT	GGG
(AGG)	 AG	993-1001	GT	AGG
(AGA)	 AG	1024-1047	GT	TGG
(GAG)	 AG	1137-1180	GT	AGG
(CCT)	 AG	1406-1667	GT	AAG
(GAA)	 AG	1796-1861	GT	CTG
(AGA)	 AG	1993-2016	GT	AGG
(AGA)	 AG	2037-2066	GT	AGG
(AGA)	 AG	2087-2094	GT	AGG
-recovered GeneMark_model.109557_t, internal, 937, 963
-recovered GeneMark_model.109557_t, internal, 993, 1001
-recovered GeneMark_model.109557_t, internal, 1024, 1047
-recovered GeneMark_model.109557_t, internal, 1137, 1180
-recovered GeneMark_model.109557_t, internal, 1406, 1667
-recovered GeneMark_model.109557_t, internal, 1796, 1861
-recovered GeneMark_model.109557_t, internal, 1993, 2016
-recovered GeneMark_model.109557_t, internal, 2037, 2066
-recovered GeneMark_model.109557_t, internal, 2087, 2094

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2117
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support