-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1624

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1624-snap.1-T1
Sorry, intron length (9) is less than minimum required (10)
Couldn't classify 1394, 1519
Sorry, prediction GeneMark_model.109551_t fails validation.
(ATG)	 TC	368-531	GT	ATG
(AAG)	 AG	783-830	GT	GAG
(GAG)	 AG	855-860	GT	GAG
(AAG)	 AG	882-890	GT	AGG
(GAA)	 AG	911-967	GC	GCG
(AGA)	 AG	1008-1154	GC	GAG
(AAG)	 AG	1187-1372	GT	GAG
(GGG)	 AG	1394-1519	GT	AGG
-recovered GeneMark_model.109551_t, initial, 368, 531
-recovered GeneMark_model.109551_t, internal, 783, 830
-recovered GeneMark_model.109551_t, internal, 855, 860
-recovered GeneMark_model.109551_t, internal, 882, 890
-recovered GeneMark_model.109551_t, internal, 911, 967
-recovered GeneMark_model.109551_t, internal, 1008, 1154
-recovered GeneMark_model.109551_t, internal, 1187, 1372
-recovered GeneMark_model.109551_t, internal, 1394, 1519

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1986, 2020
Sorry, prediction GeneMark_model.109550_t fails validation.
(ATG)	 CT	1819-1853	GT	GAG
(AAA)	 AG	1911-1964	GT	GAG
(GTC)	 AG	1986-2020	GT	AGG
-recovered GeneMark_model.109550_t, initial, 1819, 1853
-recovered GeneMark_model.109550_t, terminal, 1911, 1964
-recovered GeneMark_model.109550_t, internal, 1911, 1964
-recovered GeneMark_model.109550_t, internal, 1986, 2020

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2128
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support