-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1623

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1623-snap.2-T1
add_exon() Sorry, snap_scaffold_1623-snap.2-T1 1830-2035-terminal-1 is invalid.
Valid prediction for GeneMark_model.109548_t
add_exon() Sorry, GeneMark_model.109548_t 53-219-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1711, 1788
Sorry, prediction snap_scaffold_1623-snap.1-T1 fails validation.
(ATG)	 AG	603-679	GT	AGG
(TAT)	 AG	869-1007	GT	AGG
(GTG)	 AG	1571-1633	GT	ACG
(CTG)	 AG	1711-1788	GT	AGG
-recovered snap_scaffold_1623-snap.1-T1, initial, 603, 679
-recovered snap_scaffold_1623-snap.1-T1, internal, 603, 679
-recovered snap_scaffold_1623-snap.1-T1, internal, 869, 1007
-recovered snap_scaffold_1623-snap.1-T1, internal, 1571, 1633
-recovered snap_scaffold_1623-snap.1-T1, internal, 1711, 1788
Couldn't classify 218, 340
Couldn't classify 2036, 2131
Sorry, prediction Augustus_model.g41767.t1 fails validation.
(AGA)	 AG	218-340	GT	CAG
(AGA)	 AG	601-679	GT	AGG
(TAT)	 AG	869-1007	GT	AGG
(GTG)	 AG	1571-1633	GT	ACG
(CTG)	 AG	1711-1788	GT	AGG
(GAG)	 AG	2036-2131		TG
-recovered Augustus_model.g41767.t1, internal, 218, 340
-recovered Augustus_model.g41767.t1, internal, 601, 679
-recovered Augustus_model.g41767.t1, internal, 869, 1007
-recovered Augustus_model.g41767.t1, internal, 1571, 1633
-recovered Augustus_model.g41767.t1, internal, 1711, 1788
Couldn't classify 218, 340
Sorry, prediction GlimmerHMM_glimmerT_62744-T1 fails validation.
(AGA)	 AG	218-340	GT	CAG
(AGA)	 AG	601-679	GT	AGG
(TAT)	 AG	869-1007	GT	AGG
(GTG)	 AG	1571-1633	GT	ACG
(CTG)	 AG	1711-1836	TC	AAT
-recovered GlimmerHMM_glimmerT_62744-T1, terminal, 1711, 1836
-recovered GlimmerHMM_glimmerT_62744-T1, internal, 218, 340
-recovered GlimmerHMM_glimmerT_62744-T1, internal, 601, 679
-recovered GlimmerHMM_glimmerT_62744-T1, internal, 869, 1007
-recovered GlimmerHMM_glimmerT_62744-T1, internal, 1571, 1633
Couldn't classify 218, 340
Sorry, prediction GeneMark_model.109549_t fails validation.
(AGA)	 AG	218-340	GT	CAG
(AGA)	 AG	601-679	GT	AGG
(TAT)	 AG	869-1007	GT	AGG
(GTG)	 AG	1571-1633	GT	ACG
(CTG)	 AG	1711-1836	TC	AAT
-recovered GeneMark_model.109549_t, terminal, 1711, 1836
-recovered GeneMark_model.109549_t, internal, 218, 340
-recovered GeneMark_model.109549_t, internal, 601, 679
-recovered GeneMark_model.109549_t, internal, 869, 1007
-recovered GeneMark_model.109549_t, internal, 1571, 1633
Couldn't classify 217, 340
Couldn't classify 1571, 1636
Sorry, prediction pasa_asmbl_17640.p1 fails validation.
(GAG)	 CA	217-340	GT	CAG
(AGA)	 AG	601-679	GT	AGG
(TAT)	 AG	869-1007	GT	AGG
(GTG)	 AG	1571-1636	TG	TTT
-recovered pasa_asmbl_17640.p1, internal, 601, 679
-recovered pasa_asmbl_17640.p1, internal, 869, 1007

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2131
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support