-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1622

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 158, 247
Couldn't classify 1298, 1396
Sorry, prediction GeneMark_model.109547_t fails validation.
(CCA)	 AG	158-247	GT	AGG
(GCT)	 AG	1298-1396	GT	GGG
-recovered GeneMark_model.109547_t, internal, 158, 247
-recovered GeneMark_model.109547_t, internal, 1298, 1396

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62743-T1
Couldn't classify 741, 942
Sorry, prediction snap_scaffold_1622-snap.1-T1 fails validation.
(ATG)	 GA	440-504	GT	CTG
(CCC)	 AG	741-942	GT	TGG
-recovered snap_scaffold_1622-snap.1-T1, initial, 440, 504
-recovered snap_scaffold_1622-snap.1-T1, internal, 741, 942

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2132
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support