-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1618

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 670, 982
Couldn't classify 1707, 1775
Sorry, prediction snap_scaffold_1618-snap.1-T1 fails validation.
(ACT)	 AG	670-982	GT	GAG
(GGA)	 AG	1707-1775	GT	AGG
-recovered snap_scaffold_1618-snap.1-T1, internal, 670, 982
-recovered snap_scaffold_1618-snap.1-T1, internal, 1707, 1775

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41765.t1
Valid prediction for GlimmerHMM_glimmerT_62739-T1
Couldn't classify 499, 517
Sorry, prediction GeneMark_model.109542_t fails validation.
(AGC)	 AG	499-517	GT	TGG
(ATG)	 AG	1175-1476	AG	GAA
-recovered GeneMark_model.109542_t, terminal, 1175, 1476
-recovered GeneMark_model.109542_t, internal, 499, 517
Couldn't classify 389, 517
Couldn't classify 1175, 1456
Sorry, prediction snap_scaffold_1618-snap.2-T1 fails validation.
(GGG)	 AG	389-517	GT	TGG
(ATG)	 AG	1175-1456	GT	TAG
add_exon() Sorry, snap_scaffold_1618-snap.2-T1 1175-1456-initial-1 is invalid.
-recovered snap_scaffold_1618-snap.2-T1, initial, 1175, 1456
-recovered snap_scaffold_1618-snap.2-T1, internal, 389, 517
-recovered snap_scaffold_1618-snap.2-T1, internal, 1175, 1456

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1775, rend_intergenic: 682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2137
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1775, rend_intergenic: 682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support