-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1617

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 399, 560
Couldn't classify 2063, 2117
Sorry, prediction snap_scaffold_1617-snap.2-T1 fails validation.
(ACA)	 AG	399-560	GT	GGG
(GTT)	 AG	2063-2117	GT	CGG
-recovered snap_scaffold_1617-snap.2-T1, internal, 399, 560
-recovered snap_scaffold_1617-snap.2-T1, internal, 2063, 2117

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1753, 1863
Sorry, prediction snap_scaffold_1617-snap.1-T1 fails validation.
(ATG)	 CG	34-130	GT	AGG
(GAG)	 AG	1753-1863	GT	CAG
-recovered snap_scaffold_1617-snap.1-T1, initial, 34, 130
-recovered snap_scaffold_1617-snap.1-T1, internal, 1753, 1863
Couldn't classify 1753, 1863
Sorry, prediction Augustus_model.g41764.t1 fails validation.
(ATG)	 CG	34-130	GT	AGG
(GAG)	 AG	1753-1863	GT	CAG
-recovered Augustus_model.g41764.t1, initial, 34, 130
-recovered Augustus_model.g41764.t1, internal, 1753, 1863

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2107, rend_intergenic: 399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2140
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2107, rend_intergenic: 399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support