-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1616

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 191, 364
Sorry, prediction GeneMark_model.109540_t fails validation.
(GAG)	 AG	191-364	GC	GAG
(AGA)	 AG	416-472	GT	GAG
(GAA)	 AG	596-703	GT	GAG
(GGG)	 AG	759-810	GA	AGG
-recovered GeneMark_model.109540_t, terminal, 759, 810
-recovered GeneMark_model.109540_t, internal, 191, 364
-recovered GeneMark_model.109540_t, internal, 416, 472
-recovered GeneMark_model.109540_t, internal, 596, 703
Couldn't classify 549, 826
Sorry, prediction snap_scaffold_1616-snap.1-T1 fails validation.
(ATC)	 AG	549-826	GT	CTG
-recovered snap_scaffold_1616-snap.1-T1, internal, 549, 826

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 471, 488
Sorry, prediction GeneMark_model.109541_t fails validation.
(GTG)	 AG	471-488	GT	AGG
(TGT)	 AG	533-553	GT	GAG
(TCA)	 AG	587-598	GT	AGG
(AGA)	 AG	689-697	GT	GAG
(TAA)	 AG	721-741	GT	GAG
(AGA)	 AG	763-777	GT	GAG
(TTC)	 AG	1099-1113	GT	CAG
(ATG)	 AG	1137-1149	TC	AGT
-recovered GeneMark_model.109541_t, terminal, 1137, 1149
-recovered GeneMark_model.109541_t, internal, 471, 488
-recovered GeneMark_model.109541_t, internal, 533, 553
-recovered GeneMark_model.109541_t, internal, 587, 598
-recovered GeneMark_model.109541_t, internal, 689, 697
-recovered GeneMark_model.109541_t, internal, 721, 741
-recovered GeneMark_model.109541_t, internal, 763, 777
-recovered GeneMark_model.109541_t, internal, 1099, 1113

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2141
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support