-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1615

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41763.t1
Valid prediction for snap_scaffold_1615-snap.3-T1
add_exon() Sorry, snap_scaffold_1615-snap.3-T1 1455-1668-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62738-T1
Couldn't classify 2020, 2046
Sorry, prediction GeneMark_model.109539_t fails validation.
(ATG)	 TC	1368-1552	GT	GTG
(AGA)	 AG	1809-1898	GT	GAG
(CTT)	 AG	2020-2046	GT	GGG
-recovered GeneMark_model.109539_t, initial, 1368, 1552
-recovered GeneMark_model.109539_t, internal, 1809, 1898
-recovered GeneMark_model.109539_t, internal, 2020, 2046
Valid prediction for snap_scaffold_1615-snap.2-T1
Valid prediction for Augustus_model.g41762.t1
Valid prediction for snap_scaffold_1615-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2141
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support