-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1613

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1447, 1590
Sorry, prediction Augustus_model.g41761.t1 fails validation.
(GAA)	 AG	1447-1590	GT	CAG
-recovered Augustus_model.g41761.t1, internal, 1447, 1590
Couldn't classify 520, 603
Couldn't classify 2106, 2121
Sorry, prediction GeneMark_model.109538_t fails validation.
(GGG)	 AG	520-603	GT	AGG
(AGA)	 AG	749-757	GC	GGG
(CGG)	 AG	789-827	GT	GAG
(AGG)	 AG	851-867	GT	GAG
(GAA)	 AG	1447-1590	GT	CAG
(CTG)	 AG	2106-2121	GC	AAG
-recovered GeneMark_model.109538_t, internal, 520, 603
-recovered GeneMark_model.109538_t, internal, 749, 757
-recovered GeneMark_model.109538_t, internal, 789, 827
-recovered GeneMark_model.109538_t, internal, 851, 867
-recovered GeneMark_model.109538_t, internal, 1447, 1590
-recovered GeneMark_model.109538_t, internal, 2106, 2121

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2144
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support