-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1610

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 90, 233
Couldn't classify 1843, 2061
Sorry, prediction GeneMark_model.109534_t fails validation.
(ATC)	 AG	90-233	GT	AGG
(AGA)	 AG	258-341	GT	AGG
(AGG)	 AG	1699-1818	GT	GAG
(ACA)	 AG	1843-2061	GT	GAG
-recovered GeneMark_model.109534_t, internal, 90, 233
-recovered GeneMark_model.109534_t, internal, 258, 341
-recovered GeneMark_model.109534_t, internal, 1699, 1818
-recovered GeneMark_model.109534_t, internal, 1843, 2061

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62736-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62736-T1 1944-2103-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2147
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support