-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_161

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9977, 10049
Sorry, prediction snap_scaffold_161-snap.1-T1 fails validation.
(ATG)	 GG	101-106	GT	AGG
(CTT)	 AG	2798-2910	GT	AAG
(ACC)	 AG	3852-4019	GT	ATG
(ACT)	 AG	9977-10049	GT	AGG
-recovered snap_scaffold_161-snap.1-T1, initial, 101, 106
-recovered snap_scaffold_161-snap.1-T1, internal, 2798, 2910
-recovered snap_scaffold_161-snap.1-T1, internal, 3852, 4019
-recovered snap_scaffold_161-snap.1-T1, internal, 9977, 10049
Valid prediction for GeneMark_model.106786_t
Valid prediction for GlimmerHMM_glimmerT_61425-T1
Valid prediction for GeneMark_model.106787_t
Valid prediction for Augustus_model.g40851.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106788_t
Valid prediction for GeneMark_model.106785_t
Couldn't classify 11449, 11564
Sorry, prediction snap_scaffold_161-snap.2-T1 fails validation.
(ATG)	 GA	2657-2687	GT	GGG
(ACC)	 AG	7885-7929	GT	AGG
(ATA)	 AG	8381-8466	GT	GGG
(AGT)	 AG	11449-11564	GT	CGG
-recovered snap_scaffold_161-snap.2-T1, initial, 2657, 2687
-recovered snap_scaffold_161-snap.2-T1, internal, 7885, 7929
-recovered snap_scaffold_161-snap.2-T1, internal, 8381, 8466
-recovered snap_scaffold_161-snap.2-T1, internal, 11449, 11564
Valid prediction for GeneMark_model.106789_t
Couldn't classify 213, 278
Sorry, prediction GeneMark_model.106790_t fails validation.
(AGG)	 AG	213-278	GT	CAG
(GAG)	 AG	857-1033	GC	ATG
(GAG)	 AG	1172-1414	GT	GAG
(AAA)	 AG	2126-2149	GT	AAG
(AGA)	 AG	2172-2291	GT	AAG
(AGG)	 AG	2325-2400	GA	GAG
-recovered GeneMark_model.106790_t, terminal, 2325, 2400
-recovered GeneMark_model.106790_t, internal, 213, 278
-recovered GeneMark_model.106790_t, internal, 857, 1033
-recovered GeneMark_model.106790_t, internal, 1172, 1414
-recovered GeneMark_model.106790_t, internal, 2126, 2149
-recovered GeneMark_model.106790_t, internal, 2172, 2291
Couldn't classify 1111, 1414
Sorry, prediction snap_scaffold_161-snap.3-T1 fails validation.
(GAA)	 AG	1111-1414	GT	GAG
(GAG)	 AG	2061-2295	GA	AAG
-recovered snap_scaffold_161-snap.3-T1, terminal, 2061, 2295
-recovered snap_scaffold_161-snap.3-T1, internal, 1111, 1414
Valid prediction for GlimmerHMM_glimmerT_61426-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10049, rend_intergenic: 219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 11782
-exon list size: 64


building trellis

1.5    
3.0    
4.5    
6.1    
7.6    
9.1    
10.6    
12.1    
13.6    
15.2    
16.7    
18.2    
19.7    
21.2    
22.7    
24.2    
25.8    
27.3    
28.8    
30.3    
31.8    
33.3    
34.8    
36.4    
37.9    
39.4    
40.9    
42.4    
43.9    
45.5    
47.0    
48.5    
50.0    
51.5    
53.0    
54.5    
56.1    
57.6    
59.1    
60.6    
62.1    
63.6    
65.2    
66.7    
68.2    
69.7    
71.2    
72.7    
74.2    
75.8    
77.3    
78.8    
80.3    
81.8    
83.3    
84.8    
86.4    
87.9    
89.4    
90.9    
92.4    
93.9    
95.5    
97.0    
98.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 10049, rend_intergenic: 219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support