-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1605

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 78, 104
Couldn't classify 1607, 1662
Sorry, prediction GeneMark_model.109531_t fails validation.
(AAA)	 AG	78-104	GT	ATG
(ACA)	 AG	132-194	GT	AAG
(TGT)	 AG	222-290	GT	GTG
(AGA)	 AG	316-324	GT	GTG
(TGT)	 AG	352-402	GT	CAG
(AGA)	 AG	430-558	GT	GTG
(TGT)	 AG	586-642	GT	CAG
(AGA)	 AG	666-674	GT	AGG
(AGA)	 AG	720-728	GT	CAG
(AGA)	 AG	850-888	GT	GAG
(GCT)	 AG	928-993	GT	GAG
(GGG)	 AG	1025-1030	GT	AGG
(GGA)	 AG	1080-1163	GT	GAG
(ACA)	 AG	1184-1312	GT	GAG
(GGA)	 AG	1336-1401	GC	AGG
(GGA)	 AG	1445-1507	GT	GAG
(AGG)	 AG	1542-1580	GT	GGG
(ATG)	 AG	1607-1662	GT	CAG
add_exon() Sorry, GeneMark_model.109531_t 1607-1662-initial-1 is invalid.
-recovered GeneMark_model.109531_t, initial, 1607, 1662
-recovered GeneMark_model.109531_t, internal, 78, 104
-recovered GeneMark_model.109531_t, internal, 132, 194
-recovered GeneMark_model.109531_t, internal, 222, 290
-recovered GeneMark_model.109531_t, internal, 316, 324
-recovered GeneMark_model.109531_t, internal, 352, 402
-recovered GeneMark_model.109531_t, internal, 430, 558
-recovered GeneMark_model.109531_t, internal, 586, 642
-recovered GeneMark_model.109531_t, internal, 666, 674
-recovered GeneMark_model.109531_t, internal, 720, 728
-recovered GeneMark_model.109531_t, internal, 850, 888
-recovered GeneMark_model.109531_t, internal, 928, 993
-recovered GeneMark_model.109531_t, internal, 1025, 1030
-recovered GeneMark_model.109531_t, internal, 1080, 1163
-recovered GeneMark_model.109531_t, internal, 1184, 1312
-recovered GeneMark_model.109531_t, internal, 1336, 1401
-recovered GeneMark_model.109531_t, internal, 1445, 1507
-recovered GeneMark_model.109531_t, internal, 1542, 1580
-recovered GeneMark_model.109531_t, internal, 1607, 1662

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2157
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support