-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1604

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 338, 430
Sorry, prediction GeneMark_model.109529_t fails validation.
(AGA)	 AG	338-430	GT	GAG
(TGC)	 AG	455-578	AA	GAA
-recovered GeneMark_model.109529_t, terminal, 455, 578
-recovered GeneMark_model.109529_t, internal, 338, 430

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 585, 758
Couldn't classify 2012, 2094
Sorry, prediction Augustus_model.g41758.t1 fails validation.
(GTA)	 AG	585-758	GT	AGG
(GAT)	 AG	1273-1369	GT	AGG
(GGT)	 AG	1848-1920	GT	CAG
(CTT)	 AG	2012-2094	GT	AGG
-recovered Augustus_model.g41758.t1, internal, 585, 758
-recovered Augustus_model.g41758.t1, internal, 1273, 1369
-recovered Augustus_model.g41758.t1, internal, 1848, 1920
-recovered Augustus_model.g41758.t1, internal, 2012, 2094
Couldn't classify 585, 758
Couldn't classify 2012, 2094
Sorry, prediction snap_scaffold_1604-snap.1-T1 fails validation.
(GTA)	 AG	585-758	GT	AGG
(GAT)	 AG	1273-1369	GT	AGG
(GGT)	 AG	1848-1920	GT	CAG
(CTT)	 AG	2012-2094	GT	AGG
-recovered snap_scaffold_1604-snap.1-T1, internal, 585, 758
-recovered snap_scaffold_1604-snap.1-T1, internal, 1273, 1369
-recovered snap_scaffold_1604-snap.1-T1, internal, 1848, 1920
-recovered snap_scaffold_1604-snap.1-T1, internal, 2012, 2094
Couldn't classify 615, 758
Sorry, prediction GeneMark_model.109530_t fails validation.
(GAA)	 AG	615-758	GT	AGG
(TGG)	 AG	784-840	GT	AGG
(TGG)	 AG	869-988	GT	GGG
(TGT)	 AG	1017-1076	GT	GGG
(TGG)	 AG	1114-1134	GT	CAG
(GGG)	 AG	1163-1220	GA	GAG
-recovered GeneMark_model.109530_t, terminal, 1163, 1220
-recovered GeneMark_model.109530_t, internal, 615, 758
-recovered GeneMark_model.109530_t, internal, 784, 840
-recovered GeneMark_model.109530_t, internal, 869, 988
-recovered GeneMark_model.109530_t, internal, 1017, 1076
-recovered GeneMark_model.109530_t, internal, 1114, 1134
Valid prediction for GlimmerHMM_glimmerT_62734-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62734-T1 585-774-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2158
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support