-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1603

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 83, 166
Sorry, prediction GeneMark_model.109527_t fails validation.
(GGA)	 AG	83-166	GT	AGG
(GCG)	 AG	193-383	GT	AGG
(GCC)	 AG	674-697	GT	GAG
(AGA)	 AG	920-932	AG	GAA
-recovered GeneMark_model.109527_t, terminal, 920, 932
-recovered GeneMark_model.109527_t, internal, 83, 166
-recovered GeneMark_model.109527_t, internal, 193, 383
-recovered GeneMark_model.109527_t, internal, 674, 697
Couldn't classify 83, 166
Sorry, prediction snap_scaffold_1603-snap.1-T1 fails validation.
(GGA)	 AG	83-166	GT	AGG
(GGA)	 AG	642-776	AA	GAA
-recovered snap_scaffold_1603-snap.1-T1, terminal, 642, 776
-recovered snap_scaffold_1603-snap.1-T1, internal, 83, 166
Couldn't classify 83, 166
Sorry, prediction Augustus_model.g41757.t1 fails validation.
(GGA)	 AG	83-166	GT	AGG
(GGA)	 AG	642-776	AA	GAA
-recovered Augustus_model.g41757.t1, terminal, 642, 776
-recovered Augustus_model.g41757.t1, internal, 83, 166

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 71
Sorry, prediction GeneMark_model.109528_t fails validation.
(GCA)	 AG	33-71	GT	GAG
(TGG)	 AG	95-145	GT	GAG
(ACA)	 AG	187-207	GT	GAG
(AGA)	 AG	231-239	GT	GAG
(AGC)	 AG	275-341	GT	TGG
(ACT)	 AG	787-802	GT	AGG
(GAG)	 AG	967-994	GT	AAG
(GGA)	 AG	1022-1042	GT	CAG
(GAG)	 AG	1065-1200	AG	GAA
-recovered GeneMark_model.109528_t, terminal, 787, 802
-recovered GeneMark_model.109528_t, terminal, 1065, 1200
-recovered GeneMark_model.109528_t, internal, 33, 71
-recovered GeneMark_model.109528_t, internal, 95, 145
-recovered GeneMark_model.109528_t, internal, 187, 207
-recovered GeneMark_model.109528_t, internal, 231, 239
-recovered GeneMark_model.109528_t, internal, 275, 341
-recovered GeneMark_model.109528_t, internal, 787, 802
-recovered GeneMark_model.109528_t, internal, 967, 994
-recovered GeneMark_model.109528_t, internal, 1022, 1042

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2160
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support