-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1602

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 329, 337
Sorry, prediction GeneMark_model.109525_t fails validation.
(AGT)	 AG	329-337	GT	GGG
(AGA)	 AG	652-666	GT	GAG
(GGC)	 AG	1001-1153	GT	GAG
(AAA)	 AG	1176-1205	GC	GAG
(AGA)	 AG	1229-1298	GT	TAG
(CGG)	 AG	1370-1383	GT	TGG
(GGG)	 AG	1406-1450	GT	AGG
(AGG)	 AG	1476-1484	GT	GGG
(GGG)	 AG	1523-1535	GG	AAG
-recovered GeneMark_model.109525_t, terminal, 1523, 1535
-recovered GeneMark_model.109525_t, internal, 329, 337
-recovered GeneMark_model.109525_t, internal, 652, 666
-recovered GeneMark_model.109525_t, internal, 1001, 1153
-recovered GeneMark_model.109525_t, internal, 1176, 1205
-recovered GeneMark_model.109525_t, internal, 1229, 1298
-recovered GeneMark_model.109525_t, internal, 1370, 1383
-recovered GeneMark_model.109525_t, internal, 1406, 1450
-recovered GeneMark_model.109525_t, internal, 1476, 1484

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62733-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62733-T1 342-553-terminal-1 is invalid.
Couldn't classify 342, 490
Couldn't classify 1047, 1179
Sorry, prediction snap_scaffold_1602-snap.1-T1 fails validation.
(GCG)	 AG	342-490	GT	AGG
(GCC)	 AG	1047-1179	GT	AGG
-recovered snap_scaffold_1602-snap.1-T1, internal, 342, 490
-recovered snap_scaffold_1602-snap.1-T1, internal, 1047, 1179
Couldn't classify 342, 490
Couldn't classify 1047, 1179
Sorry, prediction Augustus_model.g41756.t1 fails validation.
(GCG)	 AG	342-490	GT	AGG
(GCC)	 AG	1047-1179	GT	AGG
-recovered Augustus_model.g41756.t1, internal, 342, 490
-recovered Augustus_model.g41756.t1, internal, 1047, 1179
Valid prediction for GeneMark_model.109526_t
add_exon() Sorry, GeneMark_model.109526_t 342-553-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2161
-exon list size: 23


building trellis

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36.0    
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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support