-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1601

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 169, 298
Couldn't classify 1914, 2000
Sorry, prediction snap_scaffold_1601-snap.1-T1 fails validation.
(GAA)	 AG	169-298	GT	TGG
(GTC)	 AG	1730-1878	GT	GGG
(GGT)	 AG	1914-2000	GT	AGG
-recovered snap_scaffold_1601-snap.1-T1, internal, 169, 298
-recovered snap_scaffold_1601-snap.1-T1, internal, 1730, 1878
-recovered snap_scaffold_1601-snap.1-T1, internal, 1914, 2000

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62732-T1
Couldn't classify 231, 483
Couldn't classify 1827, 1984
Sorry, prediction snap_scaffold_1601-snap.2-T1 fails validation.
(ATC)	 AG	231-483	GT	AGG
(GGC)	 AG	1827-1984	GT	AGG
-recovered snap_scaffold_1601-snap.2-T1, internal, 231, 483
-recovered snap_scaffold_1601-snap.2-T1, internal, 1827, 1984
Couldn't classify 231, 517
Couldn't classify 1827, 1984
Sorry, prediction GeneMark_model.109524_t fails validation.
(ATC)	 AG	231-517	GT	GTG
(GGA)	 AG	1487-1566	GT	CTG
(GGC)	 AG	1827-1984	GT	AGG
-recovered GeneMark_model.109524_t, internal, 231, 517
-recovered GeneMark_model.109524_t, internal, 1487, 1566
-recovered GeneMark_model.109524_t, internal, 1827, 1984
Couldn't classify 231, 483
Couldn't classify 1827, 1984
Sorry, prediction Augustus_model.g41755.t1 fails validation.
(ATC)	 AG	231-483	GT	AGG
(GGC)	 AG	1827-1984	GT	AGG
-recovered Augustus_model.g41755.t1, internal, 231, 483
-recovered Augustus_model.g41755.t1, internal, 1827, 1984

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2000, rend_intergenic: 179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2162
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2000, rend_intergenic: 179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support