-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1600

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 860, 1309
Sorry, prediction snap_scaffold_1600-snap.1-T1 fails validation.
(AGC)	 AG	860-1309	GT	AGG
(TCC)	 AG	1657-1714	AC	AAA
-recovered snap_scaffold_1600-snap.1-T1, terminal, 1657, 1714
-recovered snap_scaffold_1600-snap.1-T1, internal, 860, 1309

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 528, 584
Couldn't classify 2104, 2121
Sorry, prediction GeneMark_model.109523_t fails validation.
(GGG)	 AG	528-584	GT	GCG
(GCC)	 AG	719-736	GT	AGG
(AGG)	 AG	759-794	GT	GGG
(AGG)	 AG	830-877	GT	GTG
(GGT)	 AG	1971-2009	GT	GTG
(AGG)	 AG	2036-2041	GT	GAG
(AGG)	 AG	2064-2081	GT	GAG
(AGG)	 AG	2104-2121	GT	GAG
-recovered GeneMark_model.109523_t, terminal, 2036, 2041
-recovered GeneMark_model.109523_t, terminal, 2064, 2081
-recovered GeneMark_model.109523_t, internal, 528, 584
-recovered GeneMark_model.109523_t, internal, 719, 736
-recovered GeneMark_model.109523_t, internal, 759, 794
-recovered GeneMark_model.109523_t, internal, 830, 877
-recovered GeneMark_model.109523_t, internal, 1971, 2009
-recovered GeneMark_model.109523_t, internal, 2036, 2041
-recovered GeneMark_model.109523_t, internal, 2064, 2081
-recovered GeneMark_model.109523_t, internal, 2104, 2121

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2162
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support