-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_160

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11596, 11755
Sorry, prediction Augustus_model.g40850.t1 fails validation.
(ATG)	 GC	6547-6550	GT	GTG
(GAG)	 AG	7689-7955	GT	GGG
(ATG)	 AG	8551-8642	GT	CTG
(GTC)	 AG	8778-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered Augustus_model.g40850.t1, initial, 6547, 6550
-recovered Augustus_model.g40850.t1, initial, 8551, 8642
-recovered Augustus_model.g40850.t1, internal, 7689, 7955
-recovered Augustus_model.g40850.t1, internal, 8551, 8642
-recovered Augustus_model.g40850.t1, internal, 8778, 9113
-recovered Augustus_model.g40850.t1, internal, 11015, 11106
-recovered Augustus_model.g40850.t1, internal, 11315, 11504
-recovered Augustus_model.g40850.t1, internal, 11596, 11755
Couldn't classify 11596, 11755
Sorry, prediction GlimmerHMM_glimmerT_61424-T1 fails validation.
(ATG)	 CG	8069-8162	GT	GGG
(ATG)	 AG	8551-8642	GT	CTG
(GTC)	 AG	8778-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered GlimmerHMM_glimmerT_61424-T1, initial, 8069, 8162
-recovered GlimmerHMM_glimmerT_61424-T1, initial, 8551, 8642
-recovered GlimmerHMM_glimmerT_61424-T1, internal, 8551, 8642
-recovered GlimmerHMM_glimmerT_61424-T1, internal, 8778, 9113
-recovered GlimmerHMM_glimmerT_61424-T1, internal, 11015, 11106
-recovered GlimmerHMM_glimmerT_61424-T1, internal, 11315, 11504
-recovered GlimmerHMM_glimmerT_61424-T1, internal, 11596, 11755
Couldn't classify 11596, 11755
Sorry, prediction snap_scaffold_160-snap.3-T1 fails validation.
(ATG)	 GG	8251-8407	GT	AGG
(ATG)	 AG	8551-8642	GT	CTG
(GTC)	 AG	8778-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered snap_scaffold_160-snap.3-T1, initial, 8251, 8407
-recovered snap_scaffold_160-snap.3-T1, initial, 8551, 8642
-recovered snap_scaffold_160-snap.3-T1, internal, 8551, 8642
-recovered snap_scaffold_160-snap.3-T1, internal, 8778, 9113
-recovered snap_scaffold_160-snap.3-T1, internal, 11015, 11106
-recovered snap_scaffold_160-snap.3-T1, internal, 11315, 11504
-recovered snap_scaffold_160-snap.3-T1, internal, 11596, 11755
Couldn't classify 11596, 11755
Sorry, prediction GeneMark_model.106784_t fails validation.
(ATG)	 GA	6603-6610	GT	GTG
(AGA)	 AG	7261-7385	GT	GGG
(GAG)	 AG	7689-7986	GT	CGG
(GAC)	 AG	8084-8128	GT	AAG
(GGT)	 AG	8174-8194	GT	GAG
(TGT)	 AG	8220-8407	GT	AGG
(ATG)	 AG	8551-8637	GT	AGG
(GTG)	 AG	8659-8665	GT	ATG
(GAA)	 AG	8867-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered GeneMark_model.106784_t, initial, 6603, 6610
-recovered GeneMark_model.106784_t, initial, 8551, 8637
-recovered GeneMark_model.106784_t, internal, 7261, 7385
-recovered GeneMark_model.106784_t, internal, 7689, 7986
-recovered GeneMark_model.106784_t, internal, 8084, 8128
-recovered GeneMark_model.106784_t, internal, 8174, 8194
-recovered GeneMark_model.106784_t, internal, 8220, 8407
-recovered GeneMark_model.106784_t, internal, 8551, 8637
-recovered GeneMark_model.106784_t, internal, 8659, 8665
-recovered GeneMark_model.106784_t, internal, 8867, 9113
-recovered GeneMark_model.106784_t, internal, 11015, 11106
-recovered GeneMark_model.106784_t, internal, 11315, 11504
-recovered GeneMark_model.106784_t, internal, 11596, 11755
Couldn't classify 943, 1028
Sorry, prediction snap_scaffold_160-snap.1-T1 fails validation.
(TCT)	 AG	943-1028	GT	ATG
(GGG)	 AG	2453-2491	GT	GAG
(CTC)	 AG	6880-6946	GT	AGG
(GAG)	 AG	7689-8026	GA	GAG
-recovered snap_scaffold_160-snap.1-T1, terminal, 7689, 8026
-recovered snap_scaffold_160-snap.1-T1, internal, 943, 1028
-recovered snap_scaffold_160-snap.1-T1, internal, 2453, 2491
-recovered snap_scaffold_160-snap.1-T1, internal, 6880, 6946
Valid prediction for GlimmerHMM_glimmerT_61423-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61423-T1 7689-8026-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106782_t
Valid prediction for GeneMark_model.106783_t
Valid prediction for snap_scaffold_160-snap.4-T1
Valid prediction for snap_scaffold_160-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8026, rend_intergenic: 1192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8710, rend_intergenic: 8251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11755, rend_intergenic: 8774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 11820
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8026, rend_intergenic: 1192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8710, rend_intergenic: 8251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11755, rend_intergenic: 8774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support