-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_9976168-10270192

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_39735-T1
Valid prediction for Augustus_model.g26713.t1
Valid prediction for GeneMark_model.68058_t
Valid prediction for snap_scaffold_16-snap.1868-T1
Valid prediction for snap_scaffold_16-snap.1881-T1
Valid prediction for GeneMark_model.68060_t
Valid prediction for GeneMark_model.68108_t
Valid prediction for GeneMark_model.68090_t
Valid prediction for GlimmerHMM_glimmerT_39723-T1
Valid prediction for snap_scaffold_16-snap.1876-T1
Valid prediction for GeneMark_model.68096_t
Valid prediction for GeneMark_model.68097_t
Valid prediction for snap_scaffold_16-snap.1890-T1
Valid prediction for GlimmerHMM_glimmerT_39738-T1
Valid prediction for Augustus_model.g26694.t1
Valid prediction for snap_scaffold_16-snap.1893-T1
Valid prediction for snap_scaffold_16-snap.1882-T1
Valid prediction for GlimmerHMM_glimmerT_39715-T1
Valid prediction for GeneMark_model.68054_t
Valid prediction for GeneMark_model.68101_t
Valid prediction for Augustus_model.g26695.t1
Couldn't classify 90854, 91016
Couldn't classify 95997, 96184
Sorry, prediction pasa_asmbl_17312.p1 fails validation.
(AAC)	 GA	90854-91016	GT	CAG
(CTG)	 AG	92668-92742	GT	AGG
(ATC)	 AG	93880-93906	GT	GGG
(ACG)	 AG	95997-96184	GT	AGG
-recovered pasa_asmbl_17312.p1, internal, 92668, 92742
-recovered pasa_asmbl_17312.p1, internal, 93880, 93906
-recovered pasa_asmbl_17312.p1, internal, 95997, 96184
Valid prediction for Augustus_model.g26705.t1
Valid prediction for GlimmerHMM_glimmerT_39736-T1
Couldn't classify 61395, 61701
Couldn't classify 64760, 64866
Sorry, prediction pasa_asmbl_17311.p1 fails validation.
(CAC)	 TG	61395-61701	GT	TGG
(TTC)	 AG	62315-62424	GT	AGG
(ATT)	 AG	64409-64610	GT	AGG
(CTC)	 AG	64760-64866	CA	ACC
-recovered pasa_asmbl_17311.p1, internal, 62315, 62424
-recovered pasa_asmbl_17311.p1, internal, 64409, 64610
Valid prediction for pasa_asmbl_17318.p1
Valid prediction for pasa_asmbl_17316.p1
Valid prediction for GlimmerHMM_glimmerT_39718-T1
Valid prediction for GeneMark_model.68078_t
Valid prediction for snap_scaffold_16-snap.1894-T1
Valid prediction for GlimmerHMM_glimmerT_39705-T1
Valid prediction for Augustus_model.g26692.t1
Valid prediction for GlimmerHMM_glimmerT_39725-T1
Valid prediction for GeneMark_model.68109_t
Valid prediction for Augustus_model.g26716.t1
Valid prediction for snap_scaffold_16-snap.1870-T1
Valid prediction for snap_scaffold_16-snap.1879-T1
Valid prediction for GlimmerHMM_glimmerT_39716-T1
Valid prediction for GlimmerHMM_glimmerT_39727-T1
Valid prediction for Augustus_model.g26696.t1
Valid prediction for HiQ_model.g26707.t1
Valid prediction for Augustus_model.g26703.t1
Valid prediction for snap_scaffold_16-snap.1871-T1
Valid prediction for GeneMark_model.68056_t
Valid prediction for snap_scaffold_16-snap.1872-T1
Valid prediction for GeneMark_model.68064_t
Couldn't classify 158025, 158037
Sorry, prediction pasa_asmbl_17324.p1 fails validation.
(CTG)	 AT	158025-158037	GT	AGG
(GAC)	 AG	158180-158247	GT	GGG
(GTG)	 AG	158334-158554	GT	AGG
(AAT)	 AG	158736-158828	GT	AGG
(ACC)	 AG	159004-159087	GT	AAG
(GAG)	 AG	159165-159236	GT	AAG
(GAG)	 AG	159328-159529	GT	AGG
(TTC)	 AG	159897-160085	GT	AGG
(AAT)	 AG	160362-160501	GT	AGG
(TGA)	 AG	160631-160835	GC	GAG
-recovered pasa_asmbl_17324.p1, terminal, 160631, 160835
-recovered pasa_asmbl_17324.p1, internal, 158180, 158247
-recovered pasa_asmbl_17324.p1, internal, 158334, 158554
-recovered pasa_asmbl_17324.p1, internal, 158736, 158828
-recovered pasa_asmbl_17324.p1, internal, 159004, 159087
-recovered pasa_asmbl_17324.p1, internal, 159165, 159236
-recovered pasa_asmbl_17324.p1, internal, 159328, 159529
-recovered pasa_asmbl_17324.p1, internal, 159897, 160085
-recovered pasa_asmbl_17324.p1, internal, 160362, 160501
-recovered pasa_asmbl_17324.p1, internal, 160631, 160835
Valid prediction for snap_scaffold_16-snap.1869-T1
Valid prediction for GlimmerHMM_glimmerT_39712-T1
Valid prediction for snap_scaffold_16-snap.1878-T1
Valid prediction for GeneMark_model.68051_t
Valid prediction for GlimmerHMM_glimmerT_39729-T1
Valid prediction for snap_scaffold_16-snap.1895-T1
Valid prediction for snap_scaffold_16-snap.1874-T1
Valid prediction for HiQ_model.g26699.t1
Valid prediction for GeneMark_model.68076_t
Valid prediction for GlimmerHMM_glimmerT_39742-T1
Valid prediction for GlimmerHMM_glimmerT_39706-T1
Valid prediction for GlimmerHMM_glimmerT_39714-T1
Valid prediction for snap_scaffold_16-snap.1891-T1
Valid prediction for GeneMark_model.68114_t
Couldn't classify 42376, 42424
Couldn't classify 44393, 44566
Sorry, prediction pasa_asmbl_17618.p2 fails validation.
(CGA)	 AG	42376-42424	GT	CAG
(TGA)	 AG	44137-44252	GT	AGG
(GGT)	 AG	44393-44566	CG	AAC
-recovered pasa_asmbl_17618.p2, internal, 42376, 42424
-recovered pasa_asmbl_17618.p2, internal, 44137, 44252
Valid prediction for snap_scaffold_16-snap.1862-T1
Valid prediction for GlimmerHMM_glimmerT_39717-T1
Valid prediction for GeneMark_model.68066_t
Valid prediction for pasa_asmbl_17313.p1
Valid prediction for GeneMark_model.68084_t
Valid prediction for GlimmerHMM_glimmerT_39744-T1
Valid prediction for GlimmerHMM_glimmerT_39737-T1
Valid prediction for CodingQuarry_transcript_20035-T1
Valid prediction for GeneMark_model.68118_t
Valid prediction for GlimmerHMM_glimmerT_39741-T1
Valid prediction for GlimmerHMM_glimmerT_39719-T1
Valid prediction for GlimmerHMM_glimmerT_39724-T1
Valid prediction for GeneMark_model.68048_t
Couldn't classify 156336, 156377
Couldn't classify 157272, 157331
Sorry, prediction pasa_asmbl_17323.p1 fails validation.
(GAG)	 TC	156336-156377	GT	AGG
(ATG)	 AG	156483-156694	GT	AGG
(GAT)	 AG	156905-156992	GT	AGG
(GAT)	 AG	157272-157331	CA	TGC
-recovered pasa_asmbl_17323.p1, initial, 156483, 156694
-recovered pasa_asmbl_17323.p1, internal, 156483, 156694
-recovered pasa_asmbl_17323.p1, internal, 156905, 156992
Valid prediction for GeneMark_model.68099_t
Valid prediction for GeneMark_model.68086_t
Couldn't classify 170656, 170734
Couldn't classify 170859, 170971
Couldn't classify 173641, 173689
Couldn't classify 173772, 173918
Sorry, prediction CodingQuarry_transcript_20036-T1 fails validation.
(ATG)	 TC	170264-170437	GT	AGG
(GCT)	 AG	170656-170734	AC	TGA
(GCA)	 TA	170859-170971	GT	AGG
(GTT)	 AG	171203-171337	GT	TGG
(AAG)	 AG	171534-171641	GT	AGG
(GTT)	 AG	171949-172008	GT	AGG
(GTG)	 AG	172299-172342	GT	AGG
(AGC)	 AG	172651-172792	GT	GAG
(CGG)	 AG	172927-172992	GT	TGG
(AAC)	 AG	173225-173294	GT	TGG
(CTT)	 AG	173641-173689	AT	GTA
(GGT)	 CA	173772-173918	GT	AGG
(CTA)	 AG	174207-174315	GT	AGG
(GAT)	 AG	174491-174608	GT	AGG
(TCA)	 AG	174848-174948	TC	AAT
-recovered CodingQuarry_transcript_20036-T1, initial, 170264, 170437
-recovered CodingQuarry_transcript_20036-T1, terminal, 174848, 174948
-recovered CodingQuarry_transcript_20036-T1, internal, 171203, 171337
-recovered CodingQuarry_transcript_20036-T1, internal, 171534, 171641
-recovered CodingQuarry_transcript_20036-T1, internal, 171949, 172008
-recovered CodingQuarry_transcript_20036-T1, internal, 172299, 172342
-recovered CodingQuarry_transcript_20036-T1, internal, 172651, 172792
-recovered CodingQuarry_transcript_20036-T1, internal, 172927, 172992
-recovered CodingQuarry_transcript_20036-T1, internal, 173225, 173294
-recovered CodingQuarry_transcript_20036-T1, internal, 174207, 174315
-recovered CodingQuarry_transcript_20036-T1, internal, 174491, 174608
Valid prediction for GlimmerHMM_glimmerT_39722-T1
Valid prediction for GeneMark_model.68081_t
Valid prediction for GlimmerHMM_glimmerT_39726-T1
Valid prediction for GeneMark_model.68072_t
Valid prediction for GeneMark_model.68116_t
Valid prediction for Augustus_model.g26704.t1
Valid prediction for snap_scaffold_16-snap.1897-T1
Valid prediction for snap_scaffold_16-snap.1880-T1
Valid prediction for Augustus_model.g26715.t1
Valid prediction for GlimmerHMM_glimmerT_39709-T1
Valid prediction for snap_scaffold_16-snap.1896-T1
Valid prediction for GlimmerHMM_glimmerT_39740-T1
Valid prediction for GeneMark_model.68062_t
Valid prediction for snap_scaffold_16-snap.1892-T1
Valid prediction for HiQ_model.g26700.t1
Valid prediction for Augustus_model.g26698.t1
Valid prediction for GeneMark_model.68111_t
Valid prediction for GeneMark_model.68074_t
Valid prediction for Augustus_model.g26717.t1
Valid prediction for GlimmerHMM_glimmerT_39745-T1
Valid prediction for GeneMark_model.68070_t
Valid prediction for GeneMark_model.68103_t
Valid prediction for snap_scaffold_16-snap.1884-T1
Valid prediction for GeneMark_model.68092_t
Valid prediction for GeneMark_model.68094_t
Valid prediction for GeneMark_model.68102_t
Valid prediction for snap_scaffold_16-snap.1863-T1
Valid prediction for snap_scaffold_16-snap.1889-T1
Valid prediction for Augustus_model.g26697.t1
Valid prediction for GeneMark_model.68068_t
Valid prediction for GeneMark_model.68088_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39730-T1
Valid prediction for snap_scaffold_16-snap.1875-T1
Valid prediction for GeneMark_model.68082_t
Valid prediction for GlimmerHMM_glimmerT_39711-T1
Valid prediction for GeneMark_model.68059_t
Valid prediction for GlimmerHMM_glimmerT_39707-T1
Valid prediction for snap_scaffold_16-snap.1864-T1
Valid prediction for pasa_asmbl_16485.p1
Valid prediction for GeneMark_model.68079_t
Valid prediction for snap_scaffold_16-snap.1887-T1
Valid prediction for CodingQuarry_transcript_20039-T1
Valid prediction for GeneMark_model.68071_t
Valid prediction for GlimmerHMM_glimmerT_39704-T1
Valid prediction for GeneMark_model.68110_t
Valid prediction for GeneMark_model.68057_t
Valid prediction for GeneMark_model.68113_t
Valid prediction for GeneMark_model.68061_t
Valid prediction for Augustus_model.g26702.t1
Valid prediction for GeneMark_model.68065_t
Valid prediction for GeneMark_model.68112_t
Valid prediction for pasa_asmbl_16486.p1
Valid prediction for HiQ_model.g26712.t1
Couldn't classify 105472, 105591
Couldn't classify 105711, 105779
Sorry, prediction CodingQuarry_transcript_20038-T1 fails validation.
(ATG)	 CG	103602-103648	GT	GAG
(GCT)	 AG	103734-103880	GT	AGG
(AAT)	 AG	104004-104169	GT	AGG
(GTG)	 AG	104382-104561	GT	AGG
(GAA)	 AG	104818-104957	GT	AAG
(TCG)	 AG	105170-105335	GT	AGG
(GAG)	 AG	105472-105591	CA	ATC
(ACA)	 AT	105711-105779	GT	AGG
(TTA)	 AG	105919-106017	GT	AGG
(GAT)	 AG	106233-106463	CA	AGC
-recovered CodingQuarry_transcript_20038-T1, initial, 103602, 103648
-recovered CodingQuarry_transcript_20038-T1, terminal, 106233, 106463
-recovered CodingQuarry_transcript_20038-T1, internal, 103734, 103880
-recovered CodingQuarry_transcript_20038-T1, internal, 104004, 104169
-recovered CodingQuarry_transcript_20038-T1, internal, 104382, 104561
-recovered CodingQuarry_transcript_20038-T1, internal, 104818, 104957
-recovered CodingQuarry_transcript_20038-T1, internal, 105170, 105335
-recovered CodingQuarry_transcript_20038-T1, internal, 105919, 106017
Valid prediction for GeneMark_model.68107_t
Valid prediction for GeneMark_model.68104_t
Valid prediction for GlimmerHMM_glimmerT_39720-T1
Valid prediction for snap_scaffold_16-snap.1873-T1
Valid prediction for GeneMark_model.68069_t
Valid prediction for GeneMark_model.68050_t
Valid prediction for GeneMark_model.68085_t
Valid prediction for GeneMark_model.68067_t
Valid prediction for Augustus_model.g26693.t1
Valid prediction for HiQ_model.g26714.t1
Valid prediction for GlimmerHMM_glimmerT_39708-T1
Valid prediction for GeneMark_model.68052_t
Couldn't classify 129046, 129143
Sorry, prediction pasa_asmbl_16483.p1 fails validation.
(TCC)	 CT	129046-129143	GT	ATG
(CGG)	 AG	129441-130290	TT	AGT
-recovered pasa_asmbl_16483.p1, terminal, 129441, 130290
Valid prediction for GeneMark_model.68100_t
Couldn't classify 103407, 103501
Couldn't classify 103734, 103878
Sorry, prediction pasa_asmbl_16718.p1 fails validation.
(GTC)	 AT	103407-103501	GT	AGG
(CCA)	 AG	103586-103648	GT	GAG
(GCT)	 AG	103734-103878	AG	ACA
-recovered pasa_asmbl_16718.p1, internal, 103586, 103648
Valid prediction for Augustus_model.g26711.t1
Valid prediction for GeneMark_model.68117_t
Valid prediction for snap_scaffold_16-snap.1888-T1
Valid prediction for GlimmerHMM_glimmerT_39732-T1
Valid prediction for GeneMark_model.68080_t
Valid prediction for CodingQuarry_transcript_20037-T1
Valid prediction for HiQ_model.g26701.t1
Valid prediction for HiQ_model.g26709.t1
Valid prediction for GlimmerHMM_glimmerT_39739-T1
Couldn't classify 98411, 98500
Sorry, prediction pasa_asmbl_16488.p1 fails validation.
(GAT)	 CA	98411-98500	GT	TGG
(GCA)	 AG	98940-99039	GT	AGG
(TGT)	 AG	99209-99282	GT	AGG
(ACA)	 AG	99589-99771	AC	AAA
-recovered pasa_asmbl_16488.p1, terminal, 99589, 99771
-recovered pasa_asmbl_16488.p1, internal, 98940, 99039
-recovered pasa_asmbl_16488.p1, internal, 99209, 99282
Valid prediction for GeneMark_model.68089_t
Valid prediction for snap_scaffold_16-snap.1883-T1
Valid prediction for GeneMark_model.68077_t
Valid prediction for GlimmerHMM_glimmerT_39731-T1
Valid prediction for GeneMark_model.68095_t
Valid prediction for GeneMark_model.68083_t
Valid prediction for GlimmerHMM_glimmerT_39713-T1
Valid prediction for snap_scaffold_16-snap.1877-T1
Valid prediction for Augustus_model.g26691.t1
Valid prediction for GeneMark_model.68093_t
Valid prediction for GlimmerHMM_glimmerT_39728-T1
Valid prediction for snap_scaffold_16-snap.1867-T1
Valid prediction for snap_scaffold_16-snap.1886-T1
Valid prediction for snap_scaffold_16-snap.1860-T1
Couldn't classify 126233, 126254
Couldn't classify 127694, 127855
Sorry, prediction pasa_asmbl_16737.p1 fails validation.
(GAG)	 TT	126233-126254	GT	AGG
(GTC)	 AG	126573-126703	GT	AGG
(ATG)	 AG	127694-127855	TC	ACT
-recovered pasa_asmbl_16737.p1, internal, 126573, 126703
Valid prediction for GeneMark_model.68106_t
Couldn't classify 127976, 128473
Sorry, prediction pasa_asmbl_16484.p1 fails validation.
(GAG)	 TG	127976-128473	GA	GGG
Valid prediction for GeneMark_model.68049_t
Valid prediction for GeneMark_model.68091_t
Valid prediction for GlimmerHMM_glimmerT_39743-T1
Valid prediction for GeneMark_model.68073_t
Valid prediction for pasa_asmbl_16694.p1
Valid prediction for Augustus_model.g26708.t1
Valid prediction for GeneMark_model.68053_t
Valid prediction for Augustus_model.g26706.t1
Valid prediction for GeneMark_model.68105_t
Valid prediction for snap_scaffold_16-snap.1865-T1
Valid prediction for Augustus_model.g26710.t1
Valid prediction for snap_scaffold_16-snap.1861-T1
Valid prediction for GlimmerHMM_glimmerT_39710-T1
Valid prediction for GeneMark_model.68087_t
Valid prediction for GeneMark_model.68063_t
Valid prediction for GlimmerHMM_glimmerT_39721-T1
Couldn't classify 170285, 170336
Sorry, prediction pasa_asmbl_16482.p1 fails validation.
(GAC)	 GC	170285-170336	GT	AGG
(TTT)	 AG	170651-170775	GT	AGG
(GAG)	 AG	170928-171095	GT	AGG
(GAT)	 AG	171318-171379	GT	AGG
(GAT)	 AG	171481-171545	GT	GGG
(AGA)	 AG	171786-171953	GT	AGG
(ATG)	 AG	172086-172174	GT	AGG
(GCT)	 AG	172271-172377	GT	AAG
(TCA)	 AG	172469-172655	GT	AGG
(GGT)	 AG	172881-172988	GT	AGG
(GCA)	 AG	173088-173240	GT	AGG
(GAG)	 AG	173396-173542	GT	AGG
(ATT)	 AG	173739-173819	GT	AGG
(CTG)	 AG	173909-174095	GT	AGG
(GCT)	 AG	174256-174416	AC	GAA
add_exon() Sorry, pasa_asmbl_16482.p1 172086-172174-initial-1 is invalid.
-recovered pasa_asmbl_16482.p1, initial, 172086, 172174
add_exon() Sorry, pasa_asmbl_16482.p1 172271-172377-terminal-2 is invalid.
-recovered pasa_asmbl_16482.p1, terminal, 172271, 172377
-recovered pasa_asmbl_16482.p1, terminal, 174256, 174416
-recovered pasa_asmbl_16482.p1, internal, 170651, 170775
-recovered pasa_asmbl_16482.p1, internal, 170928, 171095
-recovered pasa_asmbl_16482.p1, internal, 171318, 171379
-recovered pasa_asmbl_16482.p1, internal, 171481, 171545
-recovered pasa_asmbl_16482.p1, internal, 171786, 171953
-recovered pasa_asmbl_16482.p1, internal, 172086, 172174
-recovered pasa_asmbl_16482.p1, internal, 172271, 172377
-recovered pasa_asmbl_16482.p1, internal, 172469, 172655
-recovered pasa_asmbl_16482.p1, internal, 172881, 172988
-recovered pasa_asmbl_16482.p1, internal, 173088, 173240
-recovered pasa_asmbl_16482.p1, internal, 173396, 173542
-recovered pasa_asmbl_16482.p1, internal, 173739, 173819
-recovered pasa_asmbl_16482.p1, internal, 173909, 174095
Valid prediction for GeneMark_model.68075_t
Valid prediction for GlimmerHMM_glimmerT_39734-T1
Valid prediction for GlimmerHMM_glimmerT_39733-T1
Valid prediction for GeneMark_model.68055_t
Valid prediction for snap_scaffold_16-snap.1885-T1
Valid prediction for snap_scaffold_16-snap.1866-T1
Valid prediction for GeneMark_model.68115_t
Valid prediction for GeneMark_model.68098_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36710, rend_intergenic: 4934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91768, rend_intergenic: 37528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111890, rend_intergenic: 91851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118681, rend_intergenic: 118093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123367, rend_intergenic: 119498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131132, rend_intergenic: 129169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 294025
-exon list size: 1022


building trellis

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11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.2    
14.3    
14.4    
14.5    
14.6    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 36710, rend_intergenic: 4934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91768, rend_intergenic: 37528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111890, rend_intergenic: 91851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118681, rend_intergenic: 118093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123367, rend_intergenic: 119498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131132, rend_intergenic: 129169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 283528 - 294025
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support