-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_9299176-9483412

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 159405, 159590
Sorry, prediction CodingQuarry_transcript_20022-T1 fails validation.
(ATG)	 AG	157339-157473	GT	AGG
(CAC)	 AG	158497-158625	GT	CGG
(GAC)	 AG	158965-158994	GT	CTG
(GTG)	 TG	159405-159590	GG	GAG
-recovered CodingQuarry_transcript_20022-T1, initial, 157339, 157473
-recovered CodingQuarry_transcript_20022-T1, internal, 157339, 157473
-recovered CodingQuarry_transcript_20022-T1, internal, 158497, 158625
-recovered CodingQuarry_transcript_20022-T1, internal, 158965, 158994
Valid prediction for GlimmerHMM_glimmerT_39638-T1
Couldn't classify 33196, 33414
Sorry, prediction pasa_asmbl_17279.p1 fails validation.
(GAA)	 AG	33196-33414	GT	GGG
(TTG)	 AG	33588-33692	GT	AGG
(GAG)	 AG	33797-33934	GT	GAG
(AAG)	 AG	34083-34214	TG	GAT
-recovered pasa_asmbl_17279.p1, terminal, 34083, 34214
-recovered pasa_asmbl_17279.p1, internal, 33196, 33414
-recovered pasa_asmbl_17279.p1, internal, 33588, 33692
-recovered pasa_asmbl_17279.p1, internal, 33797, 33934
Valid prediction for Augustus_model.g26648.t1
Valid prediction for GlimmerHMM_glimmerT_39633-T1
Valid prediction for snap_scaffold_16-snap.1755-T1
Valid prediction for GeneMark_model.67872_t
Valid prediction for GeneMark_model.67855_t
Valid prediction for GeneMark_model.67885_t
Valid prediction for GeneMark_model.67896_t
Valid prediction for GeneMark_model.67882_t
Couldn't classify 139375, 139656
Sorry, prediction pasa_asmbl_17285.p1 fails validation.
(TGT)	 AG	139375-139656	GT	AGG
(TTT)	 AG	139808-140293	GT	CTG
(GTT)	 AG	141943-142107	GT	AGG
(GTG)	 AG	143474-143755	GA	GAG
-recovered pasa_asmbl_17285.p1, terminal, 143474, 143755
-recovered pasa_asmbl_17285.p1, internal, 139375, 139656
-recovered pasa_asmbl_17285.p1, internal, 139808, 140293
-recovered pasa_asmbl_17285.p1, internal, 141943, 142107
Couldn't classify 128486, 128838
Sorry, prediction pasa_asmbl_17283.p1 fails validation.
(CAG)	 AG	128486-128838	GT	GAG
(GCA)	 AG	129837-129906	AG	GAA
add_exon() Sorry, pasa_asmbl_17283.p1 128486-128838-terminal-2 is invalid.
-recovered pasa_asmbl_17283.p1, terminal, 128486, 128838
-recovered pasa_asmbl_17283.p1, terminal, 129837, 129906
-recovered pasa_asmbl_17283.p1, internal, 128486, 128838
Valid prediction for snap_scaffold_16-snap.1744-T1
Valid prediction for snap_scaffold_16-snap.1731-T1
Valid prediction for GeneMark_model.67867_t
Valid prediction for snap_scaffold_16-snap.1740-T1
Valid prediction for snap_scaffold_16-snap.1756-T1
Valid prediction for GlimmerHMM_glimmerT_39624-T1
Valid prediction for GlimmerHMM_glimmerT_39640-T1
Valid prediction for GeneMark_model.67887_t
Valid prediction for CodingQuarry_transcript_20021-T1
Valid prediction for snap_scaffold_16-snap.1759-T1
Valid prediction for GlimmerHMM_glimmerT_39625-T1
Valid prediction for GlimmerHMM_glimmerT_39623-T1
Valid prediction for snap_scaffold_16-snap.1746-T1
Valid prediction for GeneMark_model.67886_t
Valid prediction for GeneMark_model.67891_t
Couldn't classify 29992, 30076
Couldn't classify 31129, 31256
Sorry, prediction pasa_asmbl_17277.p1 fails validation.
(ACC)	 CC	29992-30076	GT	GGG
(GTA)	 AG	30302-30425	GT	AAG
(GTG)	 AG	30825-30991	GC	AGG
(AGG)	 AG	31129-31256	GG	CAG
-recovered pasa_asmbl_17277.p1, internal, 30302, 30425
-recovered pasa_asmbl_17277.p1, internal, 30825, 30991
Valid prediction for snap_scaffold_16-snap.1726-T1
Valid prediction for GeneMark_model.67849_t
Valid prediction for CodingQuarry_transcript_20016-T1
Valid prediction for GeneMark_model.67853_t
Valid prediction for GeneMark_model.67875_t
Valid prediction for snap_scaffold_16-snap.1736-T1
Valid prediction for GeneMark_model.67861_t
Valid prediction for snap_scaffold_16-snap.1749-T1
Valid prediction for GeneMark_model.67880_t
Valid prediction for Augustus_model.g26646.t1
Couldn't classify 106846, 107178
Sorry, prediction pasa_asmbl_16466.p1 fails validation.
(CCT)	 TC	106846-107178	TC	AAT
Valid prediction for CodingQuarry_transcript_20018-T1
Valid prediction for GeneMark_model.67851_t
Valid prediction for GeneMark_model.67878_t
Valid prediction for GeneMark_model.67888_t
Valid prediction for GlimmerHMM_glimmerT_39631-T1
Valid prediction for pasa_asmbl_17286.p1
Valid prediction for snap_scaffold_16-snap.1728-T1
Valid prediction for GlimmerHMM_glimmerT_39627-T1
Valid prediction for GeneMark_model.67877_t
Valid prediction for pasa_asmbl_17621.p1
Valid prediction for GeneMark_model.67863_t
Valid prediction for snap_scaffold_16-snap.1745-T1
Valid prediction for GeneMark_model.67865_t
Valid prediction for Augustus_model.g26647.t1
Valid prediction for snap_scaffold_16-snap.1722-T1
Valid prediction for GeneMark_model.67883_t
Valid prediction for HiQ_model.g26651.t1
Valid prediction for HiQ_model.g26644.t1
Valid prediction for GlimmerHMM_glimmerT_39634-T1
Valid prediction for snap_scaffold_16-snap.1742-T1
Valid prediction for GeneMark_model.67898_t
Valid prediction for Augustus_model.g26652.t1
Valid prediction for snap_scaffold_16-snap.1758-T1
Valid prediction for Augustus_model.g26636.t1
Valid prediction for GeneMark_model.67858_t
Valid prediction for GeneMark_model.67860_t
Valid prediction for GeneMark_model.67890_t
Valid prediction for snap_scaffold_16-snap.1735-T1
Valid prediction for GlimmerHMM_glimmerT_39636-T1
Valid prediction for GeneMark_model.67874_t
Valid prediction for CodingQuarry_transcript_20019-T1
Valid prediction for GeneMark_model.67900_t
Valid prediction for snap_scaffold_16-snap.1733-T1
Valid prediction for GeneMark_model.67901_t
Valid prediction for Augustus_model.g26649.t1
Valid prediction for Augustus_model.g26645.t1
Valid prediction for GlimmerHMM_glimmerT_39635-T1
Valid prediction for snap_scaffold_16-snap.1750-T1
Valid prediction for snap_scaffold_16-snap.1751-T1
Valid prediction for GeneMark_model.67871_t
Valid prediction for snap_scaffold_16-snap.1741-T1
Valid prediction for snap_scaffold_16-snap.1732-T1
Valid prediction for snap_scaffold_16-snap.1753-T1
Valid prediction for snap_scaffold_16-snap.1720-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g26640.t1
Valid prediction for GeneMark_model.67894_t
Valid prediction for GlimmerHMM_glimmerT_39629-T1
Valid prediction for GlimmerHMM_glimmerT_39622-T1
Valid prediction for GeneMark_model.67854_t
Valid prediction for snap_scaffold_16-snap.1724-T1
Valid prediction for GeneMark_model.67881_t
Valid prediction for GeneMark_model.67899_t
Couldn't classify 139748, 140551
Couldn't classify 143438, 143554
Sorry, prediction pasa_asmbl_16455.p1 fails validation.
(CCA)	 CC	139748-140551	GT	TGG
(ACT)	 AG	140697-140906	GT	AGG
(CTT)	 AG	141020-141181	GT	AGG
(CAG)	 AG	141342-141483	GT	CGG
(TGT)	 AG	141617-141779	GT	AGG
(AGG)	 AG	141962-142140	GT	AGG
(GCA)	 AG	142311-142417	GT	AGG
(AAC)	 AG	142664-142880	GT	TGG
(GTC)	 AG	142959-143092	GT	AGG
(GAG)	 AG	143212-143310	GT	AGG
(GTC)	 AG	143438-143554	CC	CCC
-recovered pasa_asmbl_16455.p1, internal, 140697, 140906
-recovered pasa_asmbl_16455.p1, internal, 141020, 141181
-recovered pasa_asmbl_16455.p1, internal, 141342, 141483
-recovered pasa_asmbl_16455.p1, internal, 141617, 141779
-recovered pasa_asmbl_16455.p1, internal, 141962, 142140
-recovered pasa_asmbl_16455.p1, internal, 142311, 142417
-recovered pasa_asmbl_16455.p1, internal, 142664, 142880
-recovered pasa_asmbl_16455.p1, internal, 142959, 143092
-recovered pasa_asmbl_16455.p1, internal, 143212, 143310
Valid prediction for GeneMark_model.67889_t
Valid prediction for snap_scaffold_16-snap.1754-T1
Valid prediction for Augustus_model.g26638.t1
Valid prediction for snap_scaffold_16-snap.1757-T1
Valid prediction for snap_scaffold_16-snap.1738-T1
Couldn't classify 179852, 180481
Sorry, prediction pasa_asmbl_16452.p1 fails validation.
(GGG)	 CT	179852-180481	CG	GAC
Valid prediction for GeneMark_model.67850_t
Valid prediction for GlimmerHMM_glimmerT_39628-T1
Couldn't classify 108235, 109081
Couldn't classify 109178, 109425
Sorry, prediction pasa_asmbl_16464.p1 fails validation.
(GAT)	 TA	108235-109081	GT	AGG
(AGC)	 AG	109178-109425	CG	CCC
Valid prediction for Augustus_model.g26641.t1
Valid prediction for HiQ_model.g26637.t1
Valid prediction for GeneMark_model.67856_t
Valid prediction for GeneMark_model.67852_t
Valid prediction for GlimmerHMM_glimmerT_39621-T1
Valid prediction for snap_scaffold_16-snap.1737-T1
Valid prediction for GeneMark_model.67902_t
Couldn't classify 111118, 111495
Sorry, prediction pasa_asmbl_16462.p1 fails validation.
(GAA)	 TG	111118-111495	AG	CCA
Valid prediction for snap_scaffold_16-snap.1743-T1
Valid prediction for Augustus_model.g26639.t1
Couldn't classify 120067, 120155
Couldn't classify 124035, 124138
Sorry, prediction pasa_asmbl_16460.p1 fails validation.
(GGC)	 GT	120067-120155	GT	AGG
(GTG)	 AG	120538-120647	GT	TGG
(CCA)	 AG	121125-121190	GT	AGG
(ACC)	 AG	121421-121633	GT	GGG
(CAG)	 AG	122794-122919	GT	CGG
(GTA)	 AG	123809-123922	GT	AGG
(GCT)	 AG	124035-124138	GA	TGG
-recovered pasa_asmbl_16460.p1, internal, 120538, 120647
-recovered pasa_asmbl_16460.p1, internal, 121125, 121190
-recovered pasa_asmbl_16460.p1, internal, 121421, 121633
-recovered pasa_asmbl_16460.p1, internal, 122794, 122919
-recovered pasa_asmbl_16460.p1, internal, 123809, 123922
Valid prediction for GeneMark_model.67866_t
Valid prediction for GeneMark_model.67859_t
Valid prediction for snap_scaffold_16-snap.1727-T1
Valid prediction for GeneMark_model.67876_t
Valid prediction for snap_scaffold_16-snap.1739-T1
Valid prediction for snap_scaffold_16-snap.1752-T1
Valid prediction for Augustus_model.g26653.t1
Valid prediction for GlimmerHMM_glimmerT_39639-T1
Valid prediction for Augustus_model.g26643.t1
Couldn't classify 133202, 133294
Couldn't classify 134120, 134204
Sorry, prediction pasa_asmbl_16457.p1 fails validation.
(GTG)	 CT	133202-133294	GT	AGG
(CGT)	 AG	133635-134026	GT	AGG
(ATT)	 AG	134120-134204	GC	GAG
-recovered pasa_asmbl_16457.p1, internal, 133635, 134026
-recovered pasa_asmbl_16457.p1, internal, 134120, 134204
Valid prediction for Augustus_model.g26635.t1
Valid prediction for GeneMark_model.67848_t
Valid prediction for GeneMark_model.67879_t
Valid prediction for GlimmerHMM_glimmerT_39632-T1
Couldn't classify 125183, 125306
Couldn't classify 128129, 128145
Sorry, prediction pasa_asmbl_16459.p1 fails validation.
(GAG)	 GC	125183-125306	GT	ACG
(CCC)	 AG	125784-125888	GT	AGG
(GTC)	 AG	126656-126703	GT	TGG
(CTG)	 AG	127888-128028	GT	CGG
(GTG)	 AG	128129-128145	CT	AGC
-recovered pasa_asmbl_16459.p1, internal, 125784, 125888
-recovered pasa_asmbl_16459.p1, internal, 126656, 126703
-recovered pasa_asmbl_16459.p1, internal, 127888, 128028
Valid prediction for GlimmerHMM_glimmerT_39620-T1
Valid prediction for GeneMark_model.67862_t
Valid prediction for GeneMark_model.67869_t
Valid prediction for GeneMark_model.67892_t
Valid prediction for snap_scaffold_16-snap.1725-T1
Valid prediction for snap_scaffold_16-snap.1747-T1
Valid prediction for GeneMark_model.67868_t
Valid prediction for GlimmerHMM_glimmerT_39626-T1
Valid prediction for GeneMark_model.67870_t
Valid prediction for GeneMark_model.67873_t
Valid prediction for Augustus_model.g26634.t1
Couldn't classify 139307, 139693
Sorry, prediction pasa_asmbl_16456.p1 fails validation.
(ATG)	 AC	134619-136014	GT	AGG
(TTG)	 AG	136673-136787	GT	AGG
(GTT)	 AG	136925-136991	GT	AGG
(GAT)	 AG	137098-137161	GT	CAG
(ACG)	 AG	137407-137639	GT	AGG
(ATT)	 AG	138549-139136	GT	GGG
(GTG)	 AG	139307-139693	AG	CCA
-recovered pasa_asmbl_16456.p1, initial, 134619, 136014
-recovered pasa_asmbl_16456.p1, internal, 136673, 136787
-recovered pasa_asmbl_16456.p1, internal, 136925, 136991
-recovered pasa_asmbl_16456.p1, internal, 137098, 137161
-recovered pasa_asmbl_16456.p1, internal, 137407, 137639
-recovered pasa_asmbl_16456.p1, internal, 138549, 139136
Valid prediction for GeneMark_model.67864_t
Valid prediction for GlimmerHMM_glimmerT_39630-T1
Valid prediction for GlimmerHMM_glimmerT_39637-T1
Valid prediction for snap_scaffold_16-snap.1721-T1
Valid prediction for GeneMark_model.67897_t
Couldn't classify 131921, 132985
Sorry, prediction pasa_asmbl_16458.p1 fails validation.
(CCC)	 GG	131921-132985	CC	CCC
Valid prediction for snap_scaffold_16-snap.1730-T1
Valid prediction for snap_scaffold_16-snap.1734-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_16-snap.1729-T1
Valid prediction for GeneMark_model.67884_t
Valid prediction for snap_scaffold_16-snap.1723-T1
Valid prediction for Augustus_model.g26650.t1
Valid prediction for snap_scaffold_16-snap.1748-T1
Valid prediction for pasa_asmbl_16454.p1
Valid prediction for GeneMark_model.67857_t
Valid prediction for GeneMark_model.67893_t
Valid prediction for Augustus_model.g26642.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9069, rend_intergenic: 3757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15547, rend_intergenic: 13535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18398, rend_intergenic: 15847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31281, rend_intergenic: 28030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47524, rend_intergenic: 42022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75994, rend_intergenic: 58208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80304, rend_intergenic: 77195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88353, rend_intergenic: 80367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99253, rend_intergenic: 88405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109386, rend_intergenic: 105236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140205, rend_intergenic: 138608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155290, rend_intergenic: 150473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168125, rend_intergenic: 164868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179515, rend_intergenic: 168152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 184237
-exon list size: 771


building trellis

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44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.4    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.6    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.1    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
58.0    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
79.9    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.1    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.6    
85.8    
85.9    
86.0    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 9069, rend_intergenic: 3757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15547, rend_intergenic: 13535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18398, rend_intergenic: 15847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31281, rend_intergenic: 28030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47524, rend_intergenic: 42022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75994, rend_intergenic: 58208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80304, rend_intergenic: 77195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88353, rend_intergenic: 80367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99253, rend_intergenic: 88405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109386, rend_intergenic: 105236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140205, rend_intergenic: 138608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155290, rend_intergenic: 150473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168125, rend_intergenic: 164868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179515, rend_intergenic: 168152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support