-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_8333764-8528585

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g26553.t1
Valid prediction for Augustus_model.g26554.t1
Valid prediction for GlimmerHMM_glimmerT_39519-T1
Valid prediction for snap_scaffold_16-snap.1538-T1
Valid prediction for snap_scaffold_16-snap.1559-T1
Valid prediction for CodingQuarry_transcript_19991-T1
Valid prediction for GeneMark_model.67617_t
Valid prediction for GlimmerHMM_glimmerT_39516-T1
Valid prediction for pasa_asmbl_17190.p1
Valid prediction for snap_scaffold_16-snap.1549-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_39524-T1
Valid prediction for CodingQuarry_transcript_19993-T1
Valid prediction for snap_scaffold_16-snap.1540-T1
Couldn't classify 145590, 145777
Sorry, prediction pasa_asmbl_17193.p1 fails validation.
(CGT)	 AG	145590-145777	GT	AAG
(GAA)	 AG	147698-147787	GT	AAG
(TGC)	 AG	149142-149184	GT	GGG
(ATC)	 AG	150624-150746	GT	AGG
(CAA)	 AG	151004-151126	GT	ATG
(CCT)	 AG	151718-151813	GT	AGG
(TGG)	 AG	153398-153499	GT	AGG
(CCC)	 AG	153600-153761	GT	AGG
(ATC)	 AG	154014-154111	GT	AGG
(TGT)	 AG	154218-154353	GT	AGG
(ATC)	 AG	154590-154712	GT	AGG
(CTT)	 AG	154892-154993	GT	AGG
(ATC)	 AG	155191-155244	CC	AAC
-recovered pasa_asmbl_17193.p1, terminal, 155191, 155244
-recovered pasa_asmbl_17193.p1, internal, 145590, 145777
-recovered pasa_asmbl_17193.p1, internal, 147698, 147787
-recovered pasa_asmbl_17193.p1, internal, 149142, 149184
-recovered pasa_asmbl_17193.p1, internal, 150624, 150746
-recovered pasa_asmbl_17193.p1, internal, 151004, 151126
-recovered pasa_asmbl_17193.p1, internal, 151718, 151813
-recovered pasa_asmbl_17193.p1, internal, 153398, 153499
-recovered pasa_asmbl_17193.p1, internal, 153600, 153761
-recovered pasa_asmbl_17193.p1, internal, 154014, 154111
-recovered pasa_asmbl_17193.p1, internal, 154218, 154353
-recovered pasa_asmbl_17193.p1, internal, 154590, 154712
-recovered pasa_asmbl_17193.p1, internal, 154892, 154993
Valid prediction for snap_scaffold_16-snap.1544-T1
Valid prediction for GeneMark_model.67618_t
Valid prediction for GeneMark_model.67634_t
Valid prediction for GeneMark_model.67632_t
Valid prediction for snap_scaffold_16-snap.1569-T1
Valid prediction for snap_scaffold_16-snap.1562-T1
Valid prediction for GlimmerHMM_glimmerT_39508-T1
Valid prediction for snap_scaffold_16-snap.1554-T1
Valid prediction for snap_scaffold_16-snap.1556-T1
Valid prediction for GeneMark_model.67603_t
Valid prediction for snap_scaffold_16-snap.1560-T1
Valid prediction for GlimmerHMM_glimmerT_39527-T1
Valid prediction for CodingQuarry_transcript_19994-T1
Valid prediction for snap_scaffold_16-snap.1545-T1
Valid prediction for snap_scaffold_16-snap.1550-T1
Valid prediction for Augustus_model.g26568.t1
Valid prediction for snap_scaffold_16-snap.1564-T1
Valid prediction for GlimmerHMM_glimmerT_39532-T1
Valid prediction for GeneMark_model.67610_t
Valid prediction for GeneMark_model.67639_t
Valid prediction for GeneMark_model.67623_t
Valid prediction for HiQ_model.g26565.t1
Valid prediction for snap_scaffold_16-snap.1555-T1
Valid prediction for snap_scaffold_16-snap.1531-T1
Valid prediction for pasa_asmbl_17194.p1
Valid prediction for GeneMark_model.67605_t
Valid prediction for GlimmerHMM_glimmerT_39525-T1
Valid prediction for GlimmerHMM_glimmerT_39515-T1
Valid prediction for GeneMark_model.67621_t
Valid prediction for GeneMark_model.67636_t
Valid prediction for GlimmerHMM_glimmerT_39514-T1
Couldn't classify 83200, 83280
Sorry, prediction pasa_asmbl_17189.p1 fails validation.
(GTG)	 CT	83200-83280	GT	AGG
(GTG)	 AG	83361-83595	GT	AGG
(GCC)	 AG	83701-83813	TT	GAT
add_exon() Sorry, pasa_asmbl_17189.p1 83361-83595-terminal-3 is invalid.
-recovered pasa_asmbl_17189.p1, terminal, 83361, 83595
-recovered pasa_asmbl_17189.p1, terminal, 83701, 83813
-recovered pasa_asmbl_17189.p1, internal, 83361, 83595
Valid prediction for snap_scaffold_16-snap.1534-T1
Valid prediction for GeneMark_model.67608_t
Valid prediction for snap_scaffold_16-snap.1537-T1
Valid prediction for Augustus_model.g26555.t1
Valid prediction for snap_scaffold_16-snap.1547-T1
Valid prediction for Augustus_model.g26571.t1
Couldn't classify 140941, 141291
Sorry, prediction pasa_asmbl_17192.p1 fails validation.
(GCT)	 AG	140941-141291	GT	TGG
-recovered pasa_asmbl_17192.p1, internal, 140941, 141291
Valid prediction for GeneMark_model.67611_t
Valid prediction for GeneMark_model.67642_t
Valid prediction for GeneMark_model.67629_t
Valid prediction for GeneMark_model.67625_t
Valid prediction for HiQ_model.g26564.t1
Valid prediction for GlimmerHMM_glimmerT_39531-T1
Valid prediction for GlimmerHMM_glimmerT_39507-T1
Valid prediction for GeneMark_model.67615_t
Valid prediction for Augustus_model.g26560.t1
Valid prediction for snap_scaffold_16-snap.1542-T1
Valid prediction for snap_scaffold_16-snap.1530-T1
Valid prediction for GeneMark_model.67619_t
Valid prediction for GlimmerHMM_glimmerT_39529-T1
Valid prediction for snap_scaffold_16-snap.1568-T1
Valid prediction for GeneMark_model.67614_t
Valid prediction for snap_scaffold_16-snap.1536-T1
Valid prediction for Augustus_model.g26559.t1
Valid prediction for CodingQuarry_transcript_19992-T1
Valid prediction for GeneMark_model.67627_t
Valid prediction for GlimmerHMM_glimmerT_39518-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.67604_t
Valid prediction for GlimmerHMM_glimmerT_39511-T1
Valid prediction for GeneMark_model.67616_t
Valid prediction for GlimmerHMM_glimmerT_39523-T1
Valid prediction for GlimmerHMM_glimmerT_39513-T1
Couldn't classify 16813, 16968
Couldn't classify 18539, 18609
Sorry, prediction pasa_asmbl_16426.p1 fails validation.
(AGT)	 CC	16813-16968	GT	CGG
(ACT)	 AG	17724-17830	GT	TGG
(GCT)	 AG	18024-18172	GT	AGG
(GGC)	 AG	18539-18609	AT	GGA
-recovered pasa_asmbl_16426.p1, internal, 17724, 17830
-recovered pasa_asmbl_16426.p1, internal, 18024, 18172
Valid prediction for GeneMark_model.67641_t
Valid prediction for GeneMark_model.67631_t
Valid prediction for GlimmerHMM_glimmerT_39528-T1
Valid prediction for snap_scaffold_16-snap.1571-T1
Valid prediction for snap_scaffold_16-snap.1566-T1
Couldn't classify 103852, 103902
Couldn't classify 104605, 104796
Sorry, prediction pasa_asmbl_16755.p2 fails validation.
(ACT)	 AG	103852-103902	GT	CAG
(CTT)	 AG	104354-104461	GT	AGG
(CCC)	 AG	104605-104796	GC	ACG
-recovered pasa_asmbl_16755.p2, internal, 103852, 103902
-recovered pasa_asmbl_16755.p2, internal, 104354, 104461
-recovered pasa_asmbl_16755.p2, internal, 104605, 104796
Valid prediction for snap_scaffold_16-snap.1541-T1
Valid prediction for snap_scaffold_16-snap.1532-T1
Valid prediction for GlimmerHMM_glimmerT_39520-T1
Valid prediction for snap_scaffold_16-snap.1548-T1
Valid prediction for CodingQuarry_transcript_19990-T1
Valid prediction for GeneMark_model.67633_t
Valid prediction for GeneMark_model.67626_t
Valid prediction for Augustus_model.g26558.t1
Valid prediction for snap_scaffold_16-snap.1565-T1
Valid prediction for GlimmerHMM_glimmerT_39509-T1
Valid prediction for snap_scaffold_16-snap.1563-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.67638_t
Valid prediction for GlimmerHMM_glimmerT_39526-T1
Valid prediction for Augustus_model.g26570.t1
Couldn't classify 18981, 19049
Sorry, prediction pasa_asmbl_16423.p1 fails validation.
(CCA)	 CT	18981-19049	GT	TGG
(ATT)	 AG	19205-19661	GT	GGG
(GGC)	 AG	19873-19971	GT	CGG
(GGA)	 AG	20342-20432	GT	AGG
(GGA)	 AG	20622-20845	GT	AGG
(CTC)	 AG	21033-21275	GT	CGG
(ATG)	 AG	21454-21552	GT	AGG
(GCC)	 AG	21707-21900	GT	AGG
(GTG)	 AG	22095-22269	GT	GGG
(GTC)	 AG	22343-22499	GT	AGG
(GCT)	 AG	22609-22762	GT	AGG
(GTG)	 AG	23046-23157	GT	CGG
(GTC)	 AG	23277-23455	GA	GAG
add_exon() Sorry, pasa_asmbl_16423.p1 21454-21552-initial-1 is invalid.
-recovered pasa_asmbl_16423.p1, initial, 21454, 21552
-recovered pasa_asmbl_16423.p1, terminal, 23277, 23455
-recovered pasa_asmbl_16423.p1, internal, 19205, 19661
-recovered pasa_asmbl_16423.p1, internal, 19873, 19971
-recovered pasa_asmbl_16423.p1, internal, 20342, 20432
-recovered pasa_asmbl_16423.p1, internal, 20622, 20845
-recovered pasa_asmbl_16423.p1, internal, 21033, 21275
-recovered pasa_asmbl_16423.p1, internal, 21454, 21552
-recovered pasa_asmbl_16423.p1, internal, 21707, 21900
-recovered pasa_asmbl_16423.p1, internal, 22095, 22269
-recovered pasa_asmbl_16423.p1, internal, 22343, 22499
-recovered pasa_asmbl_16423.p1, internal, 22609, 22762
-recovered pasa_asmbl_16423.p1, internal, 23046, 23157
Valid prediction for pasa_asmbl_16425.p2
Valid prediction for GeneMark_model.67613_t
Valid prediction for Augustus_model.g26562.t1
Valid prediction for Augustus_model.g26561.t1
Valid prediction for snap_scaffold_16-snap.1539-T1
Valid prediction for GeneMark_model.67628_t
Valid prediction for GeneMark_model.67635_t
Valid prediction for snap_scaffold_16-snap.1567-T1
Couldn't classify 136556, 136696
Sorry, prediction pasa_asmbl_16420.p1 fails validation.
(GAG)	 CA	136556-136696	GT	AGG
(ATG)	 AG	138850-138927	GT	CGG
(GCA)	 AG	140622-140738	GT	AGG
(AAC)	 AG	140858-140937	GT	CCG
(GGA)	 AG	141070-141196	GT	ACG
(ATG)	 AG	141677-141747	GT	AGG
(GTA)	 AG	142230-142293	AA	AAA
-recovered pasa_asmbl_16420.p1, initial, 138850, 138927
-recovered pasa_asmbl_16420.p1, initial, 141677, 141747
-recovered pasa_asmbl_16420.p1, terminal, 142230, 142293
-recovered pasa_asmbl_16420.p1, internal, 138850, 138927
-recovered pasa_asmbl_16420.p1, internal, 140622, 140738
-recovered pasa_asmbl_16420.p1, internal, 140858, 140937
-recovered pasa_asmbl_16420.p1, internal, 141070, 141196
-recovered pasa_asmbl_16420.p1, internal, 141677, 141747
Valid prediction for GlimmerHMM_glimmerT_39510-T1
Valid prediction for snap_scaffold_16-snap.1553-T1
Valid prediction for GlimmerHMM_glimmerT_39517-T1
Valid prediction for snap_scaffold_16-snap.1557-T1
Valid prediction for Augustus_model.g26563.t1
Valid prediction for snap_scaffold_16-snap.1543-T1
Valid prediction for snap_scaffold_16-snap.1535-T1
Valid prediction for GlimmerHMM_glimmerT_39521-T1
Valid prediction for snap_scaffold_16-snap.1552-T1
Valid prediction for snap_scaffold_16-snap.1546-T1
Valid prediction for GlimmerHMM_glimmerT_39530-T1
Couldn't classify 108361, 108483
Sorry, prediction pasa_asmbl_16421.p1 fails validation.
(ACG)	 AA	108361-108483	GT	CGG
(GGC)	 AG	108639-108761	GT	GGG
(ATT)	 AG	109060-109134	CA	AAC
-recovered pasa_asmbl_16421.p1, terminal, 109060, 109134
-recovered pasa_asmbl_16421.p1, internal, 108639, 108761
Valid prediction for GeneMark_model.67624_t
Valid prediction for HiQ_model.g26569.t1
Valid prediction for GeneMark_model.67637_t
Valid prediction for snap_scaffold_16-snap.1529-T1
Valid prediction for Augustus_model.g26556.t1
Valid prediction for GeneMark_model.67630_t
Couldn't classify 34858, 35358
Sorry, prediction pasa_asmbl_16422.p1 fails validation.
(GTG)	 GC	34858-35358	AC	AGA
Valid prediction for GeneMark_model.67602_t
Valid prediction for Augustus_model.g26567.t1
Valid prediction for HiQ_model.g26557.t1
Valid prediction for GeneMark_model.67606_t
Valid prediction for snap_scaffold_16-snap.1570-T1
Valid prediction for snap_scaffold_16-snap.1561-T1
Valid prediction for GeneMark_model.67640_t
Valid prediction for snap_scaffold_16-snap.1558-T1
Valid prediction for GeneMark_model.67607_t
Valid prediction for GeneMark_model.67609_t
Valid prediction for GlimmerHMM_glimmerT_39522-T1
Valid prediction for snap_scaffold_16-snap.1551-T1
Valid prediction for GeneMark_model.67622_t
Valid prediction for GeneMark_model.67612_t
Valid prediction for GeneMark_model.67620_t
Valid prediction for GlimmerHMM_glimmerT_39512-T1
Valid prediction for snap_scaffold_16-snap.1533-T1
Valid prediction for Augustus_model.g26566.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14646, rend_intergenic: 7212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23655, rend_intergenic: 17364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32209, rend_intergenic: 30981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38676, rend_intergenic: 38378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42820, rend_intergenic: 40765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48943, rend_intergenic: 44288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53765, rend_intergenic: 52530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66262, rend_intergenic: 55153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73632, rend_intergenic: 70929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96677, rend_intergenic: 85689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108768, rend_intergenic: 97124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143624, rend_intergenic: 142118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149790, rend_intergenic: 145171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150791, rend_intergenic: 150547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155616, rend_intergenic: 151827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173849, rend_intergenic: 171109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194822
-exon list size: 712


building trellis

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52.2    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.0    
55.2    
55.3    
55.5    
55.6    
55.7    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.9    
57.0    
57.1    
57.3    
57.4    
57.6    
57.7    
57.8    
58.0    
58.1    
58.3    
58.4    
58.5    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.5    
62.6    
62.7    
62.9    
63.0    
63.2    
63.3    
63.4    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.6    
64.7    
64.8    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
66.0    
66.1    
66.2    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.6    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.7    
69.9    
70.0    
70.2    
70.3    
70.4    
70.6    
70.7    
70.9    
71.0    
71.1    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.3    
72.4    
72.5    
72.7    
72.8    
73.0    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
73.9    
74.1    
74.2    
74.4    
74.5    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.5    
75.6    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.5    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.9    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.8    
80.0    
80.1    
80.3    
80.4    
80.5    
80.7    
80.8    
81.0    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.4    
82.5    
82.6    
82.8    
82.9    
83.1    
83.2    
83.3    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.1    
86.3    
86.4    
86.6    
86.7    
86.8    
87.0    
87.1    
87.3    
87.4    
87.5    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.7    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.6    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.0    
91.2    
91.3    
91.5    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.1    
93.3    
93.4    
93.6    
93.7    
93.8    
94.0    
94.1    
94.3    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.0    
98.2    
98.3    
98.5    
98.6    
98.7    
98.9    
99.0    
99.2    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 14646, rend_intergenic: 7212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23655, rend_intergenic: 17364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32209, rend_intergenic: 30981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38676, rend_intergenic: 38378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42820, rend_intergenic: 40765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48943, rend_intergenic: 44288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53765, rend_intergenic: 52530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66262, rend_intergenic: 55153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73632, rend_intergenic: 70929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96677, rend_intergenic: 85689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108768, rend_intergenic: 97124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143624, rend_intergenic: 142118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149790, rend_intergenic: 145171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150791, rend_intergenic: 150547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155616, rend_intergenic: 151827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173849, rend_intergenic: 171109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 22479
-exon list size: 50


building trellis

1.9    
3.8    
5.8    
7.7    
9.6    
11.5    
13.5    
15.4    
17.3    
19.2    
21.2    
23.1    
25.0    
26.9    
28.8    
30.8    
32.7    
34.6    
36.5    
38.5    
40.4    
42.3    
44.2    
46.2    
48.1    
50.0    
51.9    
53.8    
55.8    
57.7    
59.6    
61.5    
63.5    
65.4    
67.3    
69.2    
71.2    
73.1    
75.0    
76.9    
78.8    
80.8    
82.7    
84.6    
86.5    
88.5    
90.4    
92.3    
94.2    
96.2    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 17378
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14369
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12047
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support