-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_6474206-6997656

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.1262-T1
Valid prediction for Augustus_model.g26424.t1
Valid prediction for GlimmerHMM_glimmerT_39323-T1
Valid prediction for snap_scaffold_16-snap.1275-T1
Valid prediction for snap_scaffold_16-snap.1266-T1
Valid prediction for GlimmerHMM_glimmerT_39328-T1
Valid prediction for GeneMark_model.67308_t
Valid prediction for snap_scaffold_16-snap.1282-T1
Valid prediction for snap_scaffold_16-snap.1256-T1
Valid prediction for GlimmerHMM_glimmerT_39338-T1
Valid prediction for snap_scaffold_16-snap.1278-T1
Valid prediction for snap_scaffold_16-snap.1260-T1
Valid prediction for Augustus_model.g26432.t1
Valid prediction for GlimmerHMM_glimmerT_39337-T1
Valid prediction for snap_scaffold_16-snap.1268-T1
Valid prediction for GeneMark_model.67329_t
Valid prediction for snap_scaffold_16-snap.1281-T1
Valid prediction for snap_scaffold_16-snap.1277-T1
Valid prediction for GeneMark_model.67305_t
Valid prediction for Augustus_model.g26428.t1
Valid prediction for GlimmerHMM_glimmerT_39319-T1
Valid prediction for GeneMark_model.67314_t
Valid prediction for GeneMark_model.67332_t
Valid prediction for snap_scaffold_16-snap.1270-T1
Valid prediction for snap_scaffold_16-snap.1285-T1
Valid prediction for Augustus_model.g26431.t1
Valid prediction for snap_scaffold_16-snap.1288-T1
Valid prediction for GeneMark_model.67336_t
Valid prediction for snap_scaffold_16-snap.1292-T1
Valid prediction for snap_scaffold_16-snap.1272-T1
Valid prediction for snap_scaffold_16-snap.1273-T1
Valid prediction for GeneMark_model.67338_t
Valid prediction for snap_scaffold_16-snap.1289-T1
Valid prediction for GeneMark_model.67319_t
Valid prediction for snap_scaffold_16-snap.1283-T1
Valid prediction for snap_scaffold_16-snap.1286-T1
Valid prediction for GlimmerHMM_glimmerT_39330-T1
Valid prediction for GlimmerHMM_glimmerT_39313-T1
Valid prediction for GeneMark_model.67320_t
Valid prediction for GlimmerHMM_glimmerT_39341-T1
Valid prediction for GeneMark_model.67326_t
Valid prediction for snap_scaffold_16-snap.1259-T1
Valid prediction for GeneMark_model.67315_t
Valid prediction for GlimmerHMM_glimmerT_39320-T1
Valid prediction for GlimmerHMM_glimmerT_39332-T1
Valid prediction for GeneMark_model.67324_t
Valid prediction for GeneMark_model.67334_t
Valid prediction for GlimmerHMM_glimmerT_39329-T1
Valid prediction for Augustus_model.g26429.t1
Valid prediction for GeneMark_model.67328_t
Valid prediction for snap_scaffold_16-snap.1290-T1
Valid prediction for snap_scaffold_16-snap.1287-T1
Valid prediction for GlimmerHMM_glimmerT_39314-T1
Valid prediction for GeneMark_model.67333_t
Valid prediction for GlimmerHMM_glimmerT_39318-T1
Valid prediction for Augustus_model.g26422.t1
Valid prediction for Augustus_model.g26421.t1
Valid prediction for GeneMark_model.67330_t
Valid prediction for GlimmerHMM_glimmerT_39325-T1
Valid prediction for GeneMark_model.67339_t
Valid prediction for snap_scaffold_16-snap.1265-T1
Valid prediction for GlimmerHMM_glimmerT_39339-T1
Valid prediction for GeneMark_model.67327_t
Valid prediction for GlimmerHMM_glimmerT_39331-T1
Valid prediction for GeneMark_model.67343_t
Valid prediction for GlimmerHMM_glimmerT_39327-T1
Valid prediction for Augustus_model.g26423.t1
Valid prediction for GeneMark_model.67337_t
Valid prediction for snap_scaffold_16-snap.1284-T1
Valid prediction for snap_scaffold_16-snap.1271-T1
Valid prediction for Augustus_model.g26425.t1
Valid prediction for snap_scaffold_16-snap.1280-T1
Valid prediction for GlimmerHMM_glimmerT_39333-T1
Valid prediction for GlimmerHMM_glimmerT_39343-T1
Valid prediction for GlimmerHMM_glimmerT_39336-T1
Valid prediction for GeneMark_model.67312_t
Valid prediction for GeneMark_model.67310_t
Valid prediction for snap_scaffold_16-snap.1264-T1
Valid prediction for snap_scaffold_16-snap.1274-T1
Valid prediction for Augustus_model.g26420.t1
Valid prediction for snap_scaffold_16-snap.1279-T1
Valid prediction for GeneMark_model.67321_t
Valid prediction for GeneMark_model.67318_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39321-T1
Valid prediction for snap_scaffold_16-snap.1294-T1
Valid prediction for Augustus_model.g26417.t1
Valid prediction for GlimmerHMM_glimmerT_39312-T1
Valid prediction for GlimmerHMM_glimmerT_39311-T1
Valid prediction for GeneMark_model.67322_t
Valid prediction for GlimmerHMM_glimmerT_39315-T1
Valid prediction for snap_scaffold_16-snap.1267-T1
Valid prediction for Augustus_model.g26418.t1
Valid prediction for GeneMark_model.67304_t
Valid prediction for snap_scaffold_16-snap.1293-T1
Valid prediction for GlimmerHMM_glimmerT_39322-T1
Valid prediction for GlimmerHMM_glimmerT_39326-T1
Valid prediction for snap_scaffold_16-snap.1263-T1
Valid prediction for GeneMark_model.67316_t
Valid prediction for GeneMark_model.67303_t
Valid prediction for GlimmerHMM_glimmerT_39342-T1
Valid prediction for GeneMark_model.67313_t
Valid prediction for GeneMark_model.67325_t
Valid prediction for GeneMark_model.67335_t
Valid prediction for snap_scaffold_16-snap.1291-T1
Valid prediction for GeneMark_model.67344_t
Valid prediction for GlimmerHMM_glimmerT_39324-T1
Valid prediction for GlimmerHMM_glimmerT_39335-T1
Valid prediction for GlimmerHMM_glimmerT_39317-T1
Valid prediction for GlimmerHMM_glimmerT_39340-T1
Valid prediction for Augustus_model.g26427.t1
Valid prediction for GeneMark_model.67323_t
Valid prediction for snap_scaffold_16-snap.1255-T1
Valid prediction for snap_scaffold_16-snap.1269-T1
Valid prediction for Augustus_model.g26430.t1
Valid prediction for GeneMark_model.67340_t
Valid prediction for GeneMark_model.67342_t
Valid prediction for GlimmerHMM_glimmerT_39316-T1
Valid prediction for GeneMark_model.67307_t
Valid prediction for GlimmerHMM_glimmerT_39334-T1
Valid prediction for snap_scaffold_16-snap.1276-T1
Valid prediction for snap_scaffold_16-snap.1261-T1
Valid prediction for GeneMark_model.67331_t
Valid prediction for Augustus_model.g26419.t1
Valid prediction for GeneMark_model.67311_t
Valid prediction for snap_scaffold_16-snap.1254-T1
Valid prediction for GeneMark_model.67341_t
Valid prediction for GeneMark_model.67317_t
Valid prediction for GeneMark_model.67306_t
Valid prediction for snap_scaffold_16-snap.1258-T1
Valid prediction for snap_scaffold_16-snap.1257-T1
Valid prediction for Augustus_model.g26426.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14255, rend_intergenic: 10049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75836, rend_intergenic: 75264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 523451
-exon list size: 432


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.8    
2.1    
2.3    
2.5    
2.8    
3.0    
3.2    
3.5    
3.7    
3.9    
4.1    
4.4    
4.6    
4.8    
5.1    
5.3    
5.5    
5.8    
6.0    
6.2    
6.5    
6.7    
6.9    
7.1    
7.4    
7.6    
7.8    
8.1    
8.3    
8.5    
8.8    
9.0    
9.2    
9.4    
9.7    
9.9    
10.1    
10.4    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.4    
12.7    
12.9    
13.1    
13.4    
13.6    
13.8    
14.1    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.7    
15.9    
16.1    
16.4    
16.6    
16.8    
17.1    
17.3    
17.5    
17.7    
18.0    
18.2    
18.4    
18.7    
18.9    
19.1    
19.4    
19.6    
19.8    
20.0    
20.3    
20.5    
20.7    
21.0    
21.2    
21.4    
21.7    
21.9    
22.1    
22.4    
22.6    
22.8    
23.0    
23.3    
23.5    
23.7    
24.0    
24.2    
24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.3    
26.5    
26.7    
27.0    
27.2    
27.4    
27.6    
27.9    
28.1    
28.3    
28.6    
28.8    
29.0    
29.3    
29.5    
29.7    
30.0    
30.2    
30.4    
30.6    
30.9    
31.1    
31.3    
31.6    
31.8    
32.0    
32.3    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.6    
34.8    
35.0    
35.3    
35.5    
35.7    
35.9    
36.2    
36.4    
36.6    
36.9    
37.1    
37.3    
37.6    
37.8    
38.0    
38.2    
38.5    
38.7    
38.9    
39.2    
39.4    
39.6    
39.9    
40.1    
40.3    
40.6    
40.8    
41.0    
41.2    
41.5    
41.7    
41.9    
42.2    
42.4    
42.6    
42.9    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.3    
46.5    
46.8    
47.0    
47.2    
47.5    
47.7    
47.9    
48.2    
48.4    
48.6    
48.8    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.2    
51.4    
51.6    
51.8    
52.1    
52.3    
52.5    
52.8    
53.0    
53.2    
53.5    
53.7    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.1    
58.3    
58.5    
58.8    
59.0    
59.2    
59.4    
59.7    
59.9    
60.1    
60.4    
60.6    
60.8    
61.1    
61.3    
61.5    
61.8    
62.0    
62.2    
62.4    
62.7    
62.9    
63.1    
63.4    
63.6    
63.8    
64.1    
64.3    
64.5    
64.7    
65.0    
65.2    
65.4    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.7    
68.0    
68.2    
68.4    
68.7    
68.9    
69.1    
69.4    
69.6    
69.8    
70.0    
70.3    
70.5    
70.7    
71.0    
71.2    
71.4    
71.7    
71.9    
72.1    
72.4    
72.6    
72.8    
73.0    
73.3    
73.5    
73.7    
74.0    
74.2    
74.4    
74.7    
74.9    
75.1    
75.3    
75.6    
75.8    
76.0    
76.3    
76.5    
76.7    
77.0    
77.2    
77.4    
77.6    
77.9    
78.1    
78.3    
78.6    
78.8    
79.0    
79.3    
79.5    
79.7    
80.0    
80.2    
80.4    
80.6    
80.9    
81.1    
81.3    
81.6    
81.8    
82.0    
82.3    
82.5    
82.7    
82.9    
83.2    
83.4    
83.6    
83.9    
84.1    
84.3    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
85.9    
86.2    
86.4    
86.6    
86.9    
87.1    
87.3    
87.6    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.3    
90.6    
90.8    
91.0    
91.2    
91.5    
91.7    
91.9    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.5    
93.8    
94.0    
94.2    
94.5    
94.7    
94.9    
95.2    
95.4    
95.6    
95.9    
96.1    
96.3    
96.5    
96.8    
97.0    
97.2    
97.5    
97.7    
97.9    
98.2    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 14255, rend_intergenic: 10049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75836, rend_intergenic: 75264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 512860 - 523451
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 513092 - 523451
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support