-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_5317322-5489082

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_19926-T1
Valid prediction for Augustus_model.g26313.t1
Valid prediction for GeneMark_model.67100_t
Valid prediction for snap_scaffold_16-snap.1067-T1
Valid prediction for GeneMark_model.67099_t
Valid prediction for Augustus_model.g26331.t1
Valid prediction for Augustus_model.g26328.t1
Valid prediction for pasa_asmbl_17008.p1
Valid prediction for GlimmerHMM_glimmerT_39193-T1
Valid prediction for GeneMark_model.67080_t
Valid prediction for Augustus_model.g26329.t1
Valid prediction for snap_scaffold_16-snap.1035-T1
Valid prediction for snap_scaffold_16-snap.1054-T1
Valid prediction for snap_scaffold_16-snap.1059-T1
Valid prediction for snap_scaffold_16-snap.1071-T1
Valid prediction for GlimmerHMM_glimmerT_39176-T1
Valid prediction for GlimmerHMM_glimmerT_39184-T1
Valid prediction for Augustus_model.g26311.t1
Valid prediction for GeneMark_model.67121_t
Valid prediction for Augustus_model.g26324.t1
Valid prediction for GeneMark_model.67110_t
Valid prediction for GlimmerHMM_glimmerT_39190-T1
Valid prediction for snap_scaffold_16-snap.1066-T1
Valid prediction for GeneMark_model.67086_t
Valid prediction for GeneMark_model.67119_t
Valid prediction for snap_scaffold_16-snap.1036-T1
Valid prediction for GeneMark_model.67108_t
Valid prediction for snap_scaffold_16-snap.1051-T1
Valid prediction for GlimmerHMM_glimmerT_39185-T1
Valid prediction for GeneMark_model.67112_t
Couldn't classify 60545, 60853
Sorry, prediction pasa_asmbl_16263.p1 fails validation.
(TCA)	 CC	60545-60853	AC	ACA
Valid prediction for GeneMark_model.67094_t
Valid prediction for GlimmerHMM_glimmerT_39180-T1
Valid prediction for Augustus_model.g26312.t1
Valid prediction for CodingQuarry_transcript_19924-T1
Valid prediction for snap_scaffold_16-snap.1039-T1
Valid prediction for snap_scaffold_16-snap.1057-T1
Valid prediction for GlimmerHMM_glimmerT_39182-T1
Valid prediction for GeneMark_model.67084_t
Valid prediction for GeneMark_model.67076_t
Valid prediction for snap_scaffold_16-snap.1063-T1
Valid prediction for snap_scaffold_16-snap.1064-T1
Valid prediction for GeneMark_model.67088_t
Valid prediction for HiQ_model.g26320.t1
Valid prediction for GlimmerHMM_glimmerT_39174-T1
Valid prediction for snap_scaffold_16-snap.1041-T1
Valid prediction for Augustus_model.g26314.t1
Valid prediction for GeneMark_model.67082_t
Valid prediction for Augustus_model.g26318.t1
Valid prediction for GeneMark_model.67090_t
Valid prediction for GeneMark_model.67101_t
Valid prediction for GlimmerHMM_glimmerT_39175-T1
Valid prediction for GeneMark_model.67077_t
Valid prediction for snap_scaffold_16-snap.1069-T1
Valid prediction for snap_scaffold_16-snap.1042-T1
Valid prediction for GeneMark_model.67106_t
Valid prediction for snap_scaffold_16-snap.1050-T1
Valid prediction for GlimmerHMM_glimmerT_39189-T1
Valid prediction for snap_scaffold_16-snap.1033-T1
Valid prediction for snap_scaffold_16-snap.1046-T1
Valid prediction for snap_scaffold_16-snap.1031-T1
Valid prediction for GeneMark_model.67096_t
Valid prediction for HiQ_model.g26323.t1
Valid prediction for Augustus_model.g26330.t1
Valid prediction for pasa_asmbl_17004.p2
Valid prediction for GeneMark_model.67091_t
Valid prediction for snap_scaffold_16-snap.1060-T1
Valid prediction for snap_scaffold_16-snap.1056-T1
Valid prediction for GeneMark_model.67114_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39187-T1
Valid prediction for GlimmerHMM_glimmerT_39177-T1
Valid prediction for snap_scaffold_16-snap.1049-T1
Valid prediction for Augustus_model.g26325.t1
Valid prediction for CodingQuarry_transcript_19927-T1
Valid prediction for CodingQuarry_transcript_19928-T1
Valid prediction for GeneMark_model.67081_t
Valid prediction for snap_scaffold_16-snap.1048-T1
Valid prediction for GeneMark_model.67103_t
Valid prediction for GlimmerHMM_glimmerT_39183-T1
Valid prediction for GeneMark_model.67089_t
Valid prediction for HiQ_model.g26321.t1
Valid prediction for GlimmerHMM_glimmerT_39192-T1
Valid prediction for snap_scaffold_16-snap.1055-T1
Valid prediction for Augustus_model.g26316.t1
Valid prediction for GeneMark_model.67115_t
Valid prediction for GeneMark_model.67105_t
Valid prediction for Augustus_model.g26317.t1
Couldn't classify 85304, 85603
Sorry, prediction pasa_asmbl_16272.p1 fails validation.
(TGC)	 AC	85304-85603	GA	AGG
Valid prediction for snap_scaffold_16-snap.1065-T1
Valid prediction for snap_scaffold_16-snap.1052-T1
Valid prediction for pasa_asmbl_16266.p1
Valid prediction for GlimmerHMM_glimmerT_39191-T1
Couldn't classify 65282, 65930
Sorry, prediction pasa_asmbl_16276.p1 fails validation.
(ATG)	 AA	64046-64050	GT	AGG
(CAT)	 AG	64808-65107	GT	AGG
(TGA)	 AG	65282-65930	AG	GGA
-recovered pasa_asmbl_16276.p1, initial, 64046, 64050
-recovered pasa_asmbl_16276.p1, internal, 64808, 65107
Valid prediction for HiQ_model.g26315.t1
Valid prediction for GeneMark_model.67111_t
Valid prediction for snap_scaffold_16-snap.1045-T1
Valid prediction for Augustus_model.g26327.t1
Couldn't classify 87657, 87701
Sorry, prediction pasa_asmbl_16270.p1 fails validation.
(AAA)	 AG	87657-87701	GT	TGG
(GTG)	 AG	88127-88228	GT	AGG
(TTG)	 AG	88341-88463	GT	AAG
(GAA)	 AG	88593-88625	GT	AGG
(GAG)	 AG	88872-89022	GT	AGG
(GCT)	 AG	89208-89299	GT	AGG
(GTG)	 AG	90434-90523	GT	ATG
(CCT)	 AG	90868-90912	GA	GAG
-recovered pasa_asmbl_16270.p1, terminal, 90868, 90912
-recovered pasa_asmbl_16270.p1, internal, 87657, 87701
-recovered pasa_asmbl_16270.p1, internal, 88127, 88228
-recovered pasa_asmbl_16270.p1, internal, 88341, 88463
-recovered pasa_asmbl_16270.p1, internal, 88593, 88625
-recovered pasa_asmbl_16270.p1, internal, 88872, 89022
-recovered pasa_asmbl_16270.p1, internal, 89208, 89299
-recovered pasa_asmbl_16270.p1, internal, 90434, 90523
Valid prediction for Augustus_model.g26333.t1
Valid prediction for GlimmerHMM_glimmerT_39197-T1
Valid prediction for snap_scaffold_16-snap.1070-T1
Couldn't classify 83158, 83337
Sorry, prediction pasa_asmbl_16274.p1 fails validation.
(ATG)	 AC	82303-82322	GT	AGG
(GTG)	 AG	82877-83015	GT	AGG
(GCC)	 AG	83158-83337	AT	AGA
-recovered pasa_asmbl_16274.p1, initial, 82303, 82322
-recovered pasa_asmbl_16274.p1, internal, 82877, 83015
Valid prediction for snap_scaffold_16-snap.1032-T1
Valid prediction for GlimmerHMM_glimmerT_39173-T1
Valid prediction for GlimmerHMM_glimmerT_39195-T1
Valid prediction for HiQ_model.g26319.t1
Valid prediction for GeneMark_model.67117_t
Valid prediction for CodingQuarry_transcript_19923-T1
Valid prediction for snap_scaffold_16-snap.1062-T1
Valid prediction for HiQ_model.g26336.t1
Valid prediction for snap_scaffold_16-snap.1068-T1
Valid prediction for GlimmerHMM_glimmerT_39196-T1
Couldn't classify 107751, 107804
Sorry, prediction pasa_asmbl_16265.p1 fails validation.
(ATG)	 CC	106704-106766	GT	AGG
(AAG)	 AG	106872-107045	GT	AGG
(GAA)	 AG	107331-107457	GT	AGG
(GTC)	 AG	107555-107646	GT	AGG
(GTT)	 AG	107751-107804	GT	AGG
-recovered pasa_asmbl_16265.p1, initial, 106704, 106766
-recovered pasa_asmbl_16265.p1, internal, 106872, 107045
-recovered pasa_asmbl_16265.p1, internal, 107331, 107457
-recovered pasa_asmbl_16265.p1, internal, 107555, 107646
-recovered pasa_asmbl_16265.p1, internal, 107751, 107804
Valid prediction for GeneMark_model.67123_t
Valid prediction for snap_scaffold_16-snap.1058-T1
Valid prediction for GeneMark_model.67097_t
Valid prediction for CodingQuarry_transcript_19922-T1
Valid prediction for snap_scaffold_16-snap.1040-T1
Valid prediction for GlimmerHMM_glimmerT_39194-T1
Valid prediction for GeneMark_model.67113_t
Valid prediction for snap_scaffold_16-snap.1030-T1
Valid prediction for pasa_asmbl_16278.p1
Valid prediction for snap_scaffold_16-snap.1061-T1
Valid prediction for GeneMark_model.67079_t
Valid prediction for HiQ_model.g26322.t1
Valid prediction for GeneMark_model.67116_t
Valid prediction for GeneMark_model.67107_t
Valid prediction for GeneMark_model.67093_t
Valid prediction for GeneMark_model.67098_t
Valid prediction for GeneMark_model.67078_t
Valid prediction for GeneMark_model.67095_t
Valid prediction for snap_scaffold_16-snap.1034-T1
Valid prediction for HiQ_model.g26337.t1
Valid prediction for snap_scaffold_16-snap.1044-T1
Valid prediction for GlimmerHMM_glimmerT_39179-T1
Valid prediction for Augustus_model.g26335.t1
Couldn't classify 17201, 17332
Sorry, prediction pasa_asmbl_16279.p1 fails validation.
(GGA)	 AT	17201-17332	GT	AGG
(GTG)	 AG	17539-17634	GT	AGG
(GTT)	 AG	17756-17877	GT	AGG
(GCA)	 AG	18085-18091	AG	GAA
-recovered pasa_asmbl_16279.p1, terminal, 18085, 18091
-recovered pasa_asmbl_16279.p1, internal, 17539, 17634
-recovered pasa_asmbl_16279.p1, internal, 17756, 17877
Valid prediction for Augustus_model.g26334.t1
Valid prediction for GeneMark_model.67120_t
Valid prediction for Augustus_model.g26332.t1
Valid prediction for pasa_asmbl_16281.p1
Valid prediction for CodingQuarry_transcript_19925-T1
Valid prediction for GlimmerHMM_glimmerT_39188-T1
Valid prediction for GeneMark_model.67104_t
Couldn't classify 66024, 66225
Sorry, prediction pasa_asmbl_16275.p1 fails validation.
(GAC)	 AG	66024-66225	GT	AGG
(GAG)	 AG	66349-66508	GT	AGG
(ACT)	 AG	66608-66786	GT	GGG
(GCG)	 AG	66916-67002	GT	AGG
(GGG)	 AG	67453-67536	GT	CGG
(GTC)	 AG	67715-68088	CC	GAC
-recovered pasa_asmbl_16275.p1, terminal, 67715, 68088
-recovered pasa_asmbl_16275.p1, internal, 66024, 66225
-recovered pasa_asmbl_16275.p1, internal, 66349, 66508
-recovered pasa_asmbl_16275.p1, internal, 66608, 66786
-recovered pasa_asmbl_16275.p1, internal, 66916, 67002
-recovered pasa_asmbl_16275.p1, internal, 67453, 67536
Valid prediction for GeneMark_model.67087_t
Valid prediction for Augustus_model.g26326.t1
Valid prediction for GeneMark_model.67092_t
Valid prediction for snap_scaffold_16-snap.1029-T1
Couldn't classify 125546, 125662
Sorry, prediction pasa_asmbl_16262.p1 fails validation.
(GAG)	 AG	125546-125662	GT	AGG
(GTG)	 AG	126045-126126	GT	AGG
(TGC)	 AG	126734-126814	GT	TGG
(CAT)	 AG	127515-127594	GT	AGG
(GTG)	 AG	127879-127985	GT	AAG
(CAT)	 AG	128163-128200	GT	AGG
(ACT)	 AG	128367-128509	GT	TGG
(TTT)	 AG	129194-129264	GT	AAG
(GGC)	 AG	130216-130304	GT	AGG
(GAG)	 AG	130449-130513	GT	ACG
(AAA)	 AG	130934-131036	GT	AGG
(ATT)	 AG	131179-131291	GT	AGG
(CAG)	 AG	131473-131598	GT	AGG
(GTC)	 AG	131818-131907	GT	ATG
(GTG)	 AG	132028-132186	GT	GGG
(GTG)	 AG	132282-132443	GT	AGG
(GTA)	 AG	132642-132718	GT	GGG
(GTT)	 AG	132974-133091	GT	AGG
(GAC)	 AG	133205-133345	GT	AGG
(GGT)	 AG	133501-133623	CC	GAC
add_exon() Sorry, pasa_asmbl_16262.p1 130216-130304-terminal-2 is invalid.
-recovered pasa_asmbl_16262.p1, terminal, 130216, 130304
-recovered pasa_asmbl_16262.p1, terminal, 133501, 133623
-recovered pasa_asmbl_16262.p1, internal, 125546, 125662
-recovered pasa_asmbl_16262.p1, internal, 126045, 126126
-recovered pasa_asmbl_16262.p1, internal, 126734, 126814
-recovered pasa_asmbl_16262.p1, internal, 127515, 127594
-recovered pasa_asmbl_16262.p1, internal, 127879, 127985
-recovered pasa_asmbl_16262.p1, internal, 128163, 128200
-recovered pasa_asmbl_16262.p1, internal, 128367, 128509
-recovered pasa_asmbl_16262.p1, internal, 129194, 129264
-recovered pasa_asmbl_16262.p1, internal, 130216, 130304
-recovered pasa_asmbl_16262.p1, internal, 130449, 130513
-recovered pasa_asmbl_16262.p1, internal, 130934, 131036
-recovered pasa_asmbl_16262.p1, internal, 131179, 131291
-recovered pasa_asmbl_16262.p1, internal, 131473, 131598
-recovered pasa_asmbl_16262.p1, internal, 131818, 131907
-recovered pasa_asmbl_16262.p1, internal, 132028, 132186
-recovered pasa_asmbl_16262.p1, internal, 132282, 132443
-recovered pasa_asmbl_16262.p1, internal, 132642, 132718
-recovered pasa_asmbl_16262.p1, internal, 132974, 133091
-recovered pasa_asmbl_16262.p1, internal, 133205, 133345
Valid prediction for GeneMark_model.67102_t
Valid prediction for GeneMark_model.67083_t
Valid prediction for GlimmerHMM_glimmerT_39186-T1
Valid prediction for snap_scaffold_16-snap.1053-T1
Couldn't classify 84146, 84259
Couldn't classify 84955, 85102
Sorry, prediction pasa_asmbl_16273.p1 fails validation.
(TAC)	 TG	84146-84259	GT	AGG
(GTG)	 AG	84354-84563	GT	AGG
(GTG)	 AG	84665-84855	GT	AGG
(ATC)	 AG	84955-85102	CA	GCC
-recovered pasa_asmbl_16273.p1, internal, 84354, 84563
-recovered pasa_asmbl_16273.p1, internal, 84665, 84855
Valid prediction for GlimmerHMM_glimmerT_39178-T1
Valid prediction for GeneMark_model.67109_t
Valid prediction for GeneMark_model.67118_t
Valid prediction for GeneMark_model.67085_t
Valid prediction for CodingQuarry_transcript_19921-T1
Couldn't classify 13217, 13309
Couldn't classify 15008, 15179
Sorry, prediction pasa_asmbl_16280.p1 fails validation.
(ACA)	 TG	13217-13309	GT	AGG
(GTG)	 AG	13384-13565	GT	TGG
(GTG)	 AG	14264-14390	GT	AGG
(ATC)	 AG	14525-14671	GT	AGG
(AAC)	 AG	14816-14910	GT	AGG
(AGC)	 AG	15008-15179	GG	GGG
-recovered pasa_asmbl_16280.p1, internal, 13384, 13565
-recovered pasa_asmbl_16280.p1, internal, 14264, 14390
-recovered pasa_asmbl_16280.p1, internal, 14525, 14671
-recovered pasa_asmbl_16280.p1, internal, 14816, 14910
Valid prediction for Augustus_model.g26310.t1
Valid prediction for snap_scaffold_16-snap.1043-T1
Valid prediction for GlimmerHMM_glimmerT_39198-T1
Valid prediction for snap_scaffold_16-snap.1038-T1
Valid prediction for GlimmerHMM_glimmerT_39181-T1
Valid prediction for snap_scaffold_16-snap.1037-T1
Valid prediction for GeneMark_model.67122_t
Valid prediction for snap_scaffold_16-snap.1047-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18385, rend_intergenic: 13271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22059, rend_intergenic: 21074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24032, rend_intergenic: 22749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32219, rend_intergenic: 26379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42728, rend_intergenic: 36998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46700, rend_intergenic: 43127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65476, rend_intergenic: 46756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106917, rend_intergenic: 103693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115878, rend_intergenic: 114490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118171, rend_intergenic: 116422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136203, rend_intergenic: 130303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140075, rend_intergenic: 139301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150144, rend_intergenic: 140971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154796, rend_intergenic: 153333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160413, rend_intergenic: 156688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168285, rend_intergenic: 164751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171761
-exon list size: 715


building trellis

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34.9    
35.0    
35.1    
35.3    
35.4    
35.6    
35.7    
35.8    
36.0    
36.1    
36.3    
36.4    
36.5    
36.7    
36.8    
37.0    
37.1    
37.2    
37.4    
37.5    
37.7    
37.8    
37.9    
38.1    
38.2    
38.4    
38.5    
38.6    
38.8    
38.9    
39.1    
39.2    
39.3    
39.5    
39.6    
39.7    
39.9    
40.0    
40.2    
40.3    
40.4    
40.6    
40.7    
40.9    
41.0    
41.1    
41.3    
41.4    
41.6    
41.7    
41.8    
42.0    
42.1    
42.3    
42.4    
42.5    
42.7    
42.8    
43.0    
43.1    
43.2    
43.4    
43.5    
43.7    
43.8    
43.9    
44.1    
44.2    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.2    
45.3    
45.5    
45.6    
45.7    
45.9    
46.0    
46.2    
46.3    
46.4    
46.6    
46.7    
46.9    
47.0    
47.1    
47.3    
47.4    
47.6    
47.7    
47.8    
48.0    
48.1    
48.3    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.2    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.8    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.2    
52.3    
52.4    
52.6    
52.7    
52.9    
53.0    
53.1    
53.3    
53.4    
53.6    
53.7    
53.8    
54.0    
54.1    
54.3    
54.4    
54.5    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.5    
57.6    
57.7    
57.9    
58.0    
58.2    
58.3    
58.4    
58.6    
58.7    
58.9    
59.0    
59.1    
59.3    
59.4    
59.6    
59.7    
59.8    
60.0    
60.1    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.1    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.0    
63.2    
63.3    
63.5    
63.6    
63.7    
63.9    
64.0    
64.2    
64.3    
64.4    
64.6    
64.7    
64.9    
65.0    
65.1    
65.3    
65.4    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.6    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.7    
69.9    
70.0    
70.2    
70.3    
70.4    
70.6    
70.7    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.6    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.5    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
77.0    
77.1    
77.3    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.7    
78.8    
78.9    
79.1    
79.2    
79.4    
79.5    
79.6    
79.8    
79.9    
80.1    
80.2    
80.3    
80.5    
80.6    
80.8    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.3    
83.4    
83.5    
83.7    
83.8    
84.0    
84.1    
84.2    
84.4    
84.5    
84.7    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.6    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.6    
88.7    
88.8    
89.0    
89.1    
89.3    
89.4    
89.5    
89.7    
89.8    
90.0    
90.1    
90.2    
90.4    
90.5    
90.7    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.6    
91.8    
91.9    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.4    
93.6    
93.7    
93.9    
94.0    
94.1    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
96.0    
96.1    
96.2    
96.4    
96.5    
96.7    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.2    
98.3    
98.5    
98.6    
98.7    
98.9    
99.0    
99.2    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 18385, rend_intergenic: 13271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22059, rend_intergenic: 21074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24032, rend_intergenic: 22749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32219, rend_intergenic: 26379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42728, rend_intergenic: 36998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46700, rend_intergenic: 43127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65476, rend_intergenic: 46756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106917, rend_intergenic: 103693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115878, rend_intergenic: 114490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118171, rend_intergenic: 116422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136203, rend_intergenic: 130303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140075, rend_intergenic: 139301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150144, rend_intergenic: 140971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154796, rend_intergenic: 153333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160413, rend_intergenic: 156688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168285, rend_intergenic: 164751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support