-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_5130250-5327989

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.1013-T1
Valid prediction for GlimmerHMM_glimmerT_39159-T1
Valid prediction for GeneMark_model.67042_t
Valid prediction for snap_scaffold_16-snap.1022-T1
Valid prediction for GeneMark_model.67055_t
Valid prediction for GlimmerHMM_glimmerT_39151-T1
Valid prediction for GeneMark_model.67066_t
Valid prediction for snap_scaffold_16-snap.1004-T1
Valid prediction for GlimmerHMM_glimmerT_39153-T1
Valid prediction for Augustus_model.g26304.t1
Valid prediction for Augustus_model.g26301.t1
Valid prediction for snap_scaffold_16-snap.1027-T1
Valid prediction for GeneMark_model.67048_t
Valid prediction for GeneMark_model.67069_t
Valid prediction for GeneMark_model.67050_t
Valid prediction for GlimmerHMM_glimmerT_39164-T1
Valid prediction for snap_scaffold_16-snap.1026-T1
Valid prediction for GlimmerHMM_glimmerT_39162-T1
Valid prediction for snap_scaffold_16-snap.1015-T1
Valid prediction for GeneMark_model.67044_t
Valid prediction for snap_scaffold_16-snap.1003-T1
Valid prediction for snap_scaffold_16-snap.1005-T1
Valid prediction for Augustus_model.g26306.t1
Valid prediction for GlimmerHMM_glimmerT_39170-T1
Valid prediction for GeneMark_model.67053_t
Valid prediction for GeneMark_model.67058_t
Valid prediction for snap_scaffold_16-snap.1010-T1
Valid prediction for snap_scaffold_16-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_39155-T1
Valid prediction for snap_scaffold_16-snap.1019-T1
Valid prediction for snap_scaffold_16-snap.1017-T1
Valid prediction for GeneMark_model.67063_t
Valid prediction for snap_scaffold_16-snap.1000-T1
Valid prediction for GlimmerHMM_glimmerT_39154-T1
Valid prediction for GlimmerHMM_glimmerT_39165-T1
Valid prediction for snap_scaffold_16-snap.1018-T1
Valid prediction for GeneMark_model.67073_t
Valid prediction for GeneMark_model.67046_t
Valid prediction for GeneMark_model.67070_t
Valid prediction for Augustus_model.g26299.t1
Valid prediction for GeneMark_model.67065_t
Valid prediction for GeneMark_model.67057_t
Valid prediction for GeneMark_model.67060_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.1008-T1
Valid prediction for GlimmerHMM_glimmerT_39166-T1
Valid prediction for snap_scaffold_16-snap.1001-T1
Valid prediction for GlimmerHMM_glimmerT_39171-T1
Valid prediction for GeneMark_model.67051_t
Valid prediction for snap_scaffold_16-snap.1014-T1
Valid prediction for Augustus_model.g26303.t1
Valid prediction for GeneMark_model.67049_t
Valid prediction for GlimmerHMM_glimmerT_39167-T1
Valid prediction for GeneMark_model.67072_t
Valid prediction for Augustus_model.g26307.t1
Valid prediction for GlimmerHMM_glimmerT_39163-T1
Valid prediction for snap_scaffold_16-snap.1006-T1
Valid prediction for snap_scaffold_16-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_39158-T1
Valid prediction for GlimmerHMM_glimmerT_39150-T1
Valid prediction for snap_scaffold_16-snap.1002-T1
Valid prediction for snap_scaffold_16-snap.1024-T1
Valid prediction for GlimmerHMM_glimmerT_39169-T1
Valid prediction for Augustus_model.g26305.t1
Valid prediction for GeneMark_model.67043_t
Valid prediction for snap_scaffold_16-snap.1021-T1
Valid prediction for GlimmerHMM_glimmerT_39172-T1
Valid prediction for snap_scaffold_16-snap.1023-T1
Valid prediction for GeneMark_model.67040_t
Valid prediction for GlimmerHMM_glimmerT_39168-T1
Valid prediction for GeneMark_model.67047_t
Valid prediction for snap_scaffold_16-snap.1028-T1
Valid prediction for snap_scaffold_16-snap.1016-T1
Valid prediction for snap_scaffold_16-snap.1009-T1
Valid prediction for GeneMark_model.67064_t
Valid prediction for GeneMark_model.67071_t
Valid prediction for GeneMark_model.67054_t
Valid prediction for GeneMark_model.67045_t
Valid prediction for GeneMark_model.67068_t
Valid prediction for Augustus_model.g26308.t1
Valid prediction for Augustus_model.g26310.t1
Valid prediction for GlimmerHMM_glimmerT_39160-T1
Valid prediction for Augustus_model.g26309.t1
Valid prediction for GeneMark_model.67062_t
Valid prediction for GlimmerHMM_glimmerT_39156-T1
Valid prediction for GeneMark_model.67056_t
Valid prediction for snap_scaffold_16-snap.1012-T1
Valid prediction for GeneMark_model.67075_t
Valid prediction for GlimmerHMM_glimmerT_39173-T1
Valid prediction for snap_scaffold_16-snap.1020-T1
Valid prediction for GlimmerHMM_glimmerT_39161-T1
Valid prediction for GeneMark_model.67059_t
Valid prediction for GeneMark_model.67067_t
Valid prediction for snap_scaffold_16-snap.1025-T1
Valid prediction for snap_scaffold_16-snap.1030-T1
Valid prediction for GeneMark_model.67041_t
Valid prediction for GlimmerHMM_glimmerT_39152-T1
Valid prediction for snap_scaffold_16-snap.1029-T1
Valid prediction for snap_scaffold_16-snap.999-T1
Valid prediction for Augustus_model.g26300.t1
Valid prediction for GeneMark_model.67074_t
Valid prediction for GlimmerHMM_glimmerT_39157-T1
Valid prediction for GeneMark_model.67052_t
Valid prediction for GeneMark_model.67061_t
Valid prediction for Augustus_model.g26302.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 137372, rend_intergenic: 131105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157709, rend_intergenic: 149311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163788, rend_intergenic: 163141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176367, rend_intergenic: 171750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187072, rend_intergenic: 178289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 173473, rend_intergenic: 173470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 197740
-exon list size: 408


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.4    
2.7    
2.9    
3.2    
3.4    
3.7    
3.9    
4.1    
4.4    
4.6    
4.9    
5.1    
5.4    
5.6    
5.9    
6.1    
6.3    
6.6    
6.8    
7.1    
7.3    
7.6    
7.8    
8.0    
8.3    
8.5    
8.8    
9.0    
9.3    
9.5    
9.8    
10.0    
10.2    
10.5    
10.7    
11.0    
11.2    
11.5    
11.7    
12.0    
12.2    
12.4    
12.7    
12.9    
13.2    
13.4    
13.7    
13.9    
14.1    
14.4    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.1    
16.3    
16.6    
16.8    
17.1    
17.3    
17.6    
17.8    
18.0    
18.3    
18.5    
18.8    
19.0    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
21.0    
21.2    
21.5    
21.7    
22.0    
22.2    
22.4    
22.7    
22.9    
23.2    
23.4    
23.7    
23.9    
24.1    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.9    
26.1    
26.3    
26.6    
26.8    
27.1    
27.3    
27.6    
27.8    
28.0    
28.3    
28.5    
28.8    
29.0    
29.3    
29.5    
29.8    
30.0    
30.2    
30.5    
30.7    
31.0    
31.2    
31.5    
31.7    
32.0    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.1    
34.4    
34.6    
34.9    
35.1    
35.4    
35.6    
35.9    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.6    
37.8    
38.0    
38.3    
38.5    
38.8    
39.0    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
41.0    
41.2    
41.5    
41.7    
42.0    
42.2    
42.4    
42.7    
42.9    
43.2    
43.4    
43.7    
43.9    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.1    
46.3    
46.6    
46.8    
47.1    
47.3    
47.6    
47.8    
48.0    
48.3    
48.5    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.5    
51.7    
52.0    
52.2    
52.4    
52.7    
52.9    
53.2    
53.4    
53.7    
53.9    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.1    
56.3    
56.6    
56.8    
57.1    
57.3    
57.6    
57.8    
58.0    
58.3    
58.5    
58.8    
59.0    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
61.0    
61.2    
61.5    
61.7    
62.0    
62.2    
62.4    
62.7    
62.9    
63.2    
63.4    
63.7    
63.9    
64.1    
64.4    
64.6    
64.9    
65.1    
65.4    
65.6    
65.9    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
67.8    
68.0    
68.3    
68.5    
68.8    
69.0    
69.3    
69.5    
69.8    
70.0    
70.2    
70.5    
70.7    
71.0    
71.2    
71.5    
71.7    
72.0    
72.2    
72.4    
72.7    
72.9    
73.2    
73.4    
73.7    
73.9    
74.1    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.9    
76.1    
76.3    
76.6    
76.8    
77.1    
77.3    
77.6    
77.8    
78.0    
78.3    
78.5    
78.8    
79.0    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
81.0    
81.2    
81.5    
81.7    
82.0    
82.2    
82.4    
82.7    
82.9    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.6    
85.9    
86.1    
86.3    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.3    
89.5    
89.8    
90.0    
90.2    
90.5    
90.7    
91.0    
91.2    
91.5    
91.7    
92.0    
92.2    
92.4    
92.7    
92.9    
93.2    
93.4    
93.7    
93.9    
94.1    
94.4    
94.6    
94.9    
95.1    
95.4    
95.6    
95.9    
96.1    
96.3    
96.6    
96.8    
97.1    
97.3    
97.6    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 137372, rend_intergenic: 131105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157709, rend_intergenic: 149311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163788, rend_intergenic: 163141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176367, rend_intergenic: 171750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187072, rend_intergenic: 178289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 173473, rend_intergenic: 173470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10713
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support