-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_482622-651250

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g25838.t1
Valid prediction for snap_scaffold_16-snap.101-T1
Valid prediction for snap_scaffold_16-snap.111-T1
Valid prediction for snap_scaffold_16-snap.107-T1
Valid prediction for GlimmerHMM_glimmerT_38527-T1
Valid prediction for snap_scaffold_16-snap.90-T1
Valid prediction for snap_scaffold_16-snap.96-T1
Valid prediction for GeneMark_model.65973_t
Valid prediction for GlimmerHMM_glimmerT_38525-T1
Valid prediction for Augustus_model.g25837.t1
Valid prediction for Augustus_model.g25847.t1
Valid prediction for GlimmerHMM_glimmerT_38530-T1
Valid prediction for GlimmerHMM_glimmerT_38536-T1
Valid prediction for Augustus_model.g25840.t1
Valid prediction for snap_scaffold_16-snap.98-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_16-snap.110-T1
Valid prediction for snap_scaffold_16-snap.114-T1
Valid prediction for GlimmerHMM_glimmerT_38532-T1
Valid prediction for GeneMark_model.65990_t
Valid prediction for snap_scaffold_16-snap.88-T1
Valid prediction for GeneMark_model.65978_t
Valid prediction for Augustus_model.g25844.t1
Valid prediction for snap_scaffold_16-snap.94-T1
Valid prediction for GlimmerHMM_glimmerT_38524-T1
Valid prediction for GlimmerHMM_glimmerT_38528-T1
Valid prediction for Augustus_model.g25848.t1
Valid prediction for GeneMark_model.65994_t
Valid prediction for GlimmerHMM_glimmerT_38538-T1
Valid prediction for snap_scaffold_16-snap.115-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_38529-T1
Valid prediction for GeneMark_model.65988_t
Valid prediction for GeneMark_model.65975_t
Valid prediction for GeneMark_model.65995_t
Valid prediction for Augustus_model.g25845.t1
Valid prediction for GeneMark_model.65982_t
Valid prediction for snap_scaffold_16-snap.92-T1
Valid prediction for snap_scaffold_16-snap.100-T1
Valid prediction for GeneMark_model.65971_t
Valid prediction for snap_scaffold_16-snap.93-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.65984_t
Valid prediction for GeneMark_model.65986_t
Valid prediction for GeneMark_model.65991_t
Valid prediction for GlimmerHMM_glimmerT_38523-T1
Valid prediction for snap_scaffold_16-snap.116-T1
Valid prediction for GeneMark_model.65980_t
Valid prediction for snap_scaffold_16-snap.106-T1
Valid prediction for GlimmerHMM_glimmerT_38526-T1
Valid prediction for Augustus_model.g25836.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.65979_t
Valid prediction for GeneMark_model.65989_t
Valid prediction for snap_scaffold_16-snap.89-T1
Valid prediction for snap_scaffold_16-snap.103-T1
Valid prediction for GlimmerHMM_glimmerT_38531-T1
Valid prediction for GlimmerHMM_glimmerT_38534-T1
Valid prediction for snap_scaffold_16-snap.99-T1
Valid prediction for Augustus_model.g25842.t1
Valid prediction for snap_scaffold_16-snap.112-T1
Valid prediction for GeneMark_model.65985_t
Valid prediction for snap_scaffold_16-snap.108-T1
Valid prediction for GlimmerHMM_glimmerT_38537-T1
Valid prediction for GeneMark_model.65987_t
Valid prediction for snap_scaffold_16-snap.102-T1
Valid prediction for GeneMark_model.65977_t
Valid prediction for GlimmerHMM_glimmerT_38535-T1
Valid prediction for GeneMark_model.65993_t
Valid prediction for snap_scaffold_16-snap.104-T1
Valid prediction for snap_scaffold_16-snap.97-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.65983_t
Valid prediction for Augustus_model.g25841.t1
Valid prediction for snap_scaffold_16-snap.91-T1
Valid prediction for snap_scaffold_16-snap.109-T1
Valid prediction for snap_scaffold_16-snap.105-T1
Valid prediction for GlimmerHMM_glimmerT_38539-T1
Valid prediction for GeneMark_model.65981_t
Valid prediction for GlimmerHMM_glimmerT_38540-T1
Valid prediction for snap_scaffold_16-snap.113-T1
Valid prediction for Augustus_model.g25849.t1
Valid prediction for Augustus_model.g25839.t1
Valid prediction for GeneMark_model.65972_t
Valid prediction for GlimmerHMM_glimmerT_38533-T1
Valid prediction for snap_scaffold_16-snap.95-T1
Valid prediction for Augustus_model.g25843.t1
Valid prediction for Augustus_model.g25846.t1
Valid prediction for GeneMark_model.65976_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13394, rend_intergenic: 8763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18944, rend_intergenic: 16350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53921, rend_intergenic: 49225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66144, rend_intergenic: 64205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75104, rend_intergenic: 70337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102587, rend_intergenic: 98279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 168629
-exon list size: 324


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.5    
2.8    
3.1    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.1    
7.4    
7.7    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.3    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.8    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.1    
33.4    
33.7    
34.0    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.5    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.5    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
66.0    
66.3    
66.6    
66.9    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.2    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.7    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.3    
92.6    
92.9    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
96.9    
97.2    
97.5    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 13394, rend_intergenic: 8763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18944, rend_intergenic: 16350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53921, rend_intergenic: 49225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66144, rend_intergenic: 64205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75104, rend_intergenic: 70337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102587, rend_intergenic: 98279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support