-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_2900893-3298020 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.66586_t Valid prediction for GeneMark_model.66593_t Valid prediction for Augustus_model.g26091.t1 Valid prediction for Augustus_model.g26084.t1 Valid prediction for GeneMark_model.66464_t Valid prediction for snap_scaffold_16-snap.613-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.66557_t Valid prediction for GeneMark_model.66561_t Valid prediction for GeneMark_model.66582_t Valid prediction for GeneMark_model.66585_t Valid prediction for GeneMark_model.66558_t Valid prediction for HiQ_model.g26110.t1 Valid prediction for GeneMark_model.66549_t Valid prediction for Augustus_model.g26086.t1 Valid prediction for Augustus_model.g26115.t1 Valid prediction for GeneMark_model.66470_t Valid prediction for GlimmerHMM_glimmerT_38865-T1 Valid prediction for snap_scaffold_16-snap.578-T1 Valid prediction for Augustus_model.g26114.t1 Valid prediction for GeneMark_model.66516_t Valid prediction for snap_scaffold_16-snap.567-T1 Valid prediction for snap_scaffold_16-snap.599-T1 Valid prediction for GeneMark_model.66566_t Valid prediction for Augustus_model.g26092.t1 Valid prediction for snap_scaffold_16-snap.606-T1 Valid prediction for GlimmerHMM_glimmerT_38895-T1 Valid prediction for snap_scaffold_16-snap.580-T1 Valid prediction for snap_scaffold_16-snap.589-T1 Valid prediction for GeneMark_model.66602_t Valid prediction for GeneMark_model.66451_t Valid prediction for snap_scaffold_16-snap.553-T1 Valid prediction for GeneMark_model.66547_t Valid prediction for GeneMark_model.66476_t Valid prediction for GeneMark_model.66529_t Valid prediction for snap_scaffold_16-snap.586-T1 Valid prediction for GeneMark_model.66605_t Valid prediction for snap_scaffold_16-snap.604-T1 Valid prediction for Augustus_model.g26106.t1 Valid prediction for snap_scaffold_16-snap.543-T1 Valid prediction for GeneMark_model.66479_t Valid prediction for GlimmerHMM_glimmerT_38893-T1 Valid prediction for GeneMark_model.66507_t Valid prediction for GeneMark_model.66573_t Valid prediction for GeneMark_model.66562_t Valid prediction for GeneMark_model.66577_t Valid prediction for Augustus_model.g26113.t1 Valid prediction for GeneMark_model.66453_t Valid prediction for GeneMark_model.66570_t Valid prediction for Augustus_model.g26085.t1 Valid prediction for GlimmerHMM_glimmerT_38868-T1 Valid prediction for snap_scaffold_16-snap.547-T1 Valid prediction for GeneMark_model.66457_t Valid prediction for GlimmerHMM_glimmerT_38877-T1 Valid prediction for GeneMark_model.66497_t Valid prediction for GlimmerHMM_glimmerT_38870-T1 Valid prediction for GeneMark_model.66543_t Valid prediction for GeneMark_model.66591_t Valid prediction for GeneMark_model.66588_t Valid prediction for GeneMark_model.66589_t Valid prediction for snap_scaffold_16-snap.595-T1 Valid prediction for GlimmerHMM_glimmerT_38887-T1 Valid prediction for GeneMark_model.66450_t Valid prediction for snap_scaffold_16-snap.575-T1 Valid prediction for snap_scaffold_16-snap.614-T1 Valid prediction for Augustus_model.g26087.t1 Valid prediction for snap_scaffold_16-snap.583-T1 Valid prediction for GeneMark_model.66455_t Valid prediction for Augustus_model.g26108.t1 Valid prediction for GlimmerHMM_glimmerT_38864-T1 Valid prediction for GeneMark_model.66514_t Valid prediction for snap_scaffold_16-snap.588-T1 Valid prediction for GeneMark_model.66569_t Valid prediction for GeneMark_model.66474_t Couldn't classify 386462, 386650 Sorry, prediction pasa_asmbl_16930.p1 fails validation. (ATG) CC 384261-384574 GT GAG (GGA) AG 384667-384732 GT CAG (GAG) AG 384933-385107 GT AGG (GAG) AG 385475-385554 GT GAG (TTA) AG 385684-385802 GT AGG (ATC) AG 385951-386033 GT AGG (ATC) AG 386462-386650 CA AGC -recovered pasa_asmbl_16930.p1, initial, 384261, 384574 add_exon() Sorry, pasa_asmbl_16930.p1 385475-385554-terminal-2 is invalid. -recovered pasa_asmbl_16930.p1, terminal, 385475, 385554 -recovered pasa_asmbl_16930.p1, internal, 384667, 384732 -recovered pasa_asmbl_16930.p1, internal, 384933, 385107 -recovered pasa_asmbl_16930.p1, internal, 385475, 385554 -recovered pasa_asmbl_16930.p1, internal, 385684, 385802 -recovered pasa_asmbl_16930.p1, internal, 385951, 386033 Valid prediction for Augustus_model.g26093.t1 Valid prediction for snap_scaffold_16-snap.573-T1 Valid prediction for GlimmerHMM_glimmerT_38890-T1 Valid prediction for GeneMark_model.66584_t Valid prediction for GeneMark_model.66508_t Valid prediction for snap_scaffold_16-snap.569-T1 Valid prediction for CodingQuarry_transcript_19879-T1 Valid prediction for GeneMark_model.66564_t Couldn't classify 197002, 197131 Couldn't classify 197573, 197637 Sorry, prediction pasa_asmbl_17585.p1 fails validation. (ACA) AG 197002-197131 GT AGG (GAC) AG 197278-197418 GT AGG (GTG) AG 197573-197637 GG CGG -recovered pasa_asmbl_17585.p1, internal, 197002, 197131 -recovered pasa_asmbl_17585.p1, internal, 197278, 197418 Valid prediction for GeneMark_model.66554_t Valid prediction for snap_scaffold_16-snap.596-T1 Valid prediction for GeneMark_model.66522_t Valid prediction for GeneMark_model.66462_t Valid prediction for GeneMark_model.66520_t Valid prediction for GeneMark_model.66575_t Valid prediction for snap_scaffold_16-snap.550-T1 Valid prediction for GeneMark_model.66468_t Valid prediction for GeneMark_model.66595_t Valid prediction for GeneMark_model.66542_t Valid prediction for snap_scaffold_16-snap.584-T1 Valid prediction for snap_scaffold_16-snap.559-T1 Valid prediction for GeneMark_model.66550_t Valid prediction for snap_scaffold_16-snap.576-T1 Valid prediction for GeneMark_model.66527_t Valid prediction for GeneMark_model.66537_t Valid prediction for GeneMark_model.66567_t Valid prediction for GeneMark_model.66528_t Valid prediction for GlimmerHMM_glimmerT_38884-T1 Valid prediction for GeneMark_model.66540_t Valid prediction for GeneMark_model.66505_t Valid prediction for GeneMark_model.66478_t Valid prediction for snap_scaffold_16-snap.611-T1 Valid prediction for GeneMark_model.66510_t Valid prediction for GeneMark_model.66490_t Valid prediction for GeneMark_model.66499_t Valid prediction for GlimmerHMM_glimmerT_38873-T1 Valid prediction for GlimmerHMM_glimmerT_38875-T1 Valid prediction for snap_scaffold_16-snap.566-T1 Valid prediction for GeneMark_model.66597_t Valid prediction for GeneMark_model.66532_t Valid prediction for GeneMark_model.66503_t Valid prediction for GlimmerHMM_glimmerT_38874-T1 Valid prediction for GeneMark_model.66581_t Valid prediction for GeneMark_model.66576_t Valid prediction for GlimmerHMM_glimmerT_38879-T1 Valid prediction for GeneMark_model.66496_t Valid prediction for snap_scaffold_16-snap.539-T1 Valid prediction for Augustus_model.g26088.t1 Valid prediction for snap_scaffold_16-snap.546-T1 Valid prediction for Augustus_model.g26090.t1 Valid prediction for GeneMark_model.66603_t Valid prediction for GeneMark_model.66600_t Valid prediction for GeneMark_model.66530_t Valid prediction for GlimmerHMM_glimmerT_38881-T1 Valid prediction for GeneMark_model.66493_t Valid prediction for GlimmerHMM_glimmerT_38871-T1 Valid prediction for Augustus_model.g26089.t1 Valid prediction for snap_scaffold_16-snap.591-T1 Valid prediction for snap_scaffold_16-snap.548-T1 Valid prediction for GlimmerHMM_glimmerT_38888-T1 Valid prediction for GeneMark_model.66460_t Valid prediction for GeneMark_model.66483_t Valid prediction for GeneMark_model.66466_t Valid prediction for GeneMark_model.66501_t Valid prediction for GeneMark_model.66518_t Valid prediction for snap_scaffold_16-snap.602-T1 Valid prediction for GeneMark_model.66526_t Valid prediction for GeneMark_model.66485_t Valid prediction for snap_scaffold_16-snap.563-T1 Valid prediction for snap_scaffold_16-snap.598-T1 Couldn't classify 198080, 198157 Sorry, prediction pasa_asmbl_16927.p2 fails validation. (GAG) CG 198080-198157 GT CGG (GTT) AG 198666-199205 CA GAC -recovered pasa_asmbl_16927.p2, terminal, 198666, 199205 Valid prediction for GeneMark_model.66545_t Valid prediction for GeneMark_model.66559_t Valid prediction for snap_scaffold_16-snap.581-T1 Valid prediction for snap_scaffold_16-snap.609-T1 Valid prediction for Augustus_model.g26094.t1 Valid prediction for GeneMark_model.66555_t Valid prediction for snap_scaffold_16-snap.601-T1 Valid prediction for snap_scaffold_16-snap.571-T1 Valid prediction for GeneMark_model.66579_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.66533_t Valid prediction for GeneMark_model.66504_t Valid prediction for GeneMark_model.66475_t Valid prediction for snap_scaffold_16-snap.570-T1 Valid prediction for snap_scaffold_16-snap.607-T1 Valid prediction for snap_scaffold_16-snap.561-T1 Valid prediction for GlimmerHMM_glimmerT_38872-T1 Valid prediction for HiQ_model.g26095.t1 Valid prediction for GeneMark_model.66456_t Valid prediction for GeneMark_model.66525_t Valid prediction for GeneMark_model.66498_t Valid prediction for GeneMark_model.66544_t Valid prediction for GeneMark_model.66580_t Valid prediction for snap_scaffold_16-snap.554-T1 Valid prediction for GlimmerHMM_glimmerT_38869-T1 Valid prediction for GlimmerHMM_glimmerT_38894-T1 Valid prediction for GeneMark_model.66546_t Valid prediction for GeneMark_model.66517_t Valid prediction for GlimmerHMM_glimmerT_38889-T1 Valid prediction for snap_scaffold_16-snap.579-T1 Valid prediction for GlimmerHMM_glimmerT_38892-T1 Valid prediction for Augustus_model.g26112.t1 Valid prediction for snap_scaffold_16-snap.542-T1 Valid prediction for GeneMark_model.66523_t Valid prediction for GlimmerHMM_glimmerT_38885-T1 Valid prediction for GeneMark_model.66472_t Valid prediction for GeneMark_model.66495_t Valid prediction for snap_scaffold_16-snap.608-T1 Valid prediction for GeneMark_model.66471_t Valid prediction for snap_scaffold_16-snap.557-T1 Valid prediction for Augustus_model.g26080.t1 Valid prediction for GeneMark_model.66560_t Valid prediction for GlimmerHMM_glimmerT_38883-T1 Valid prediction for GeneMark_model.66486_t Valid prediction for GeneMark_model.66572_t Valid prediction for CodingQuarry_transcript_19878-T1 Valid prediction for GeneMark_model.66509_t Valid prediction for GeneMark_model.66454_t Valid prediction for GeneMark_model.66458_t Valid prediction for Augustus_model.g26103.t1 Valid prediction for snap_scaffold_16-snap.555-T1 Valid prediction for snap_scaffold_16-snap.615-T1 Valid prediction for GeneMark_model.66512_t Valid prediction for Augustus_model.g26111.t1 Valid prediction for snap_scaffold_16-snap.592-T1 Valid prediction for GeneMark_model.66488_t Valid prediction for GeneMark_model.66484_t Valid prediction for Augustus_model.g26099.t1 Valid prediction for GlimmerHMM_glimmerT_38860-T1 Valid prediction for Augustus_model.g26082.t1 Valid prediction for GlimmerHMM_glimmerT_38858-T1 Valid prediction for snap_scaffold_16-snap.582-T1 Valid prediction for snap_scaffold_16-snap.565-T1 Valid prediction for snap_scaffold_16-snap.587-T1 Valid prediction for GeneMark_model.66489_t Valid prediction for GlimmerHMM_glimmerT_38866-T1 Valid prediction for GeneMark_model.66538_t Valid prediction for GeneMark_model.66487_t Valid prediction for snap_scaffold_16-snap.556-T1 Valid prediction for snap_scaffold_16-snap.552-T1 Valid prediction for GeneMark_model.66477_t Valid prediction for Augustus_model.g26109.t1 Valid prediction for GeneMark_model.66596_t Valid prediction for GeneMark_model.66515_t Valid prediction for GeneMark_model.66491_t Valid prediction for GeneMark_model.66467_t Valid prediction for snap_scaffold_16-snap.549-T1 Valid prediction for GeneMark_model.66521_t Valid prediction for GlimmerHMM_glimmerT_38886-T1 Valid prediction for GeneMark_model.66594_t Valid prediction for snap_scaffold_16-snap.538-T1 Valid prediction for GeneMark_model.66592_t Valid prediction for GlimmerHMM_glimmerT_38882-T1 Valid prediction for GlimmerHMM_glimmerT_38891-T1 Valid prediction for snap_scaffold_16-snap.574-T1 Valid prediction for GeneMark_model.66500_t Valid prediction for snap_scaffold_16-snap.545-T1 Valid prediction for GeneMark_model.66599_t Valid prediction for GeneMark_model.66480_t Valid prediction for GlimmerHMM_glimmerT_38861-T1 Valid prediction for pasa_asmbl_16150.p1 Valid prediction for GeneMark_model.66502_t Valid prediction for snap_scaffold_16-snap.572-T1 Valid prediction for GeneMark_model.66583_t Valid prediction for GeneMark_model.66459_t Valid prediction for GeneMark_model.66519_t Valid prediction for GeneMark_model.66552_t Valid prediction for Augustus_model.g26105.t1 Valid prediction for snap_scaffold_16-snap.564-T1 Valid prediction for Augustus_model.g26101.t1 Valid prediction for GeneMark_model.66465_t Valid prediction for GeneMark_model.66513_t Valid prediction for snap_scaffold_16-snap.560-T1 Valid prediction for GeneMark_model.66463_t Valid prediction for snap_scaffold_16-snap.551-T1 Valid prediction for GeneMark_model.66548_t Valid prediction for GeneMark_model.66541_t Valid prediction for Augustus_model.g26107.t1 Valid prediction for GeneMark_model.66531_t Valid prediction for snap_scaffold_16-snap.540-T1 Valid prediction for GlimmerHMM_glimmerT_38878-T1 Valid prediction for GeneMark_model.66535_t Valid prediction for GeneMark_model.66574_t Valid prediction for Augustus_model.g26098.t1 Valid prediction for GeneMark_model.66452_t Valid prediction for snap_scaffold_16-snap.610-T1 Valid prediction for GeneMark_model.66587_t Valid prediction for GeneMark_model.66553_t Valid prediction for GlimmerHMM_glimmerT_38880-T1 Valid prediction for snap_scaffold_16-snap.603-T1 Valid prediction for Augustus_model.g26096.t1 Valid prediction for GeneMark_model.66590_t Valid prediction for snap_scaffold_16-snap.597-T1 Valid prediction for GeneMark_model.66482_t Valid prediction for snap_scaffold_16-snap.558-T1 Valid prediction for GeneMark_model.66598_t Valid prediction for Augustus_model.g26097.t1 Valid prediction for GeneMark_model.66511_t Valid prediction for snap_scaffold_16-snap.616-T1 Valid prediction for GlimmerHMM_glimmerT_38867-T1 Valid prediction for snap_scaffold_16-snap.594-T1 Valid prediction for snap_scaffold_16-snap.568-T1 Valid prediction for GeneMark_model.66604_t Valid prediction for GlimmerHMM_glimmerT_38862-T1 Valid prediction for snap_scaffold_16-snap.612-T1 Valid prediction for GeneMark_model.66601_t Valid prediction for snap_scaffold_16-snap.577-T1 Valid prediction for GeneMark_model.66536_t Valid prediction for GeneMark_model.66473_t Valid prediction for snap_scaffold_16-snap.600-T1 Valid prediction for GeneMark_model.66571_t Valid prediction for GeneMark_model.66568_t Valid prediction for GeneMark_model.66563_t Valid prediction for snap_scaffold_16-snap.562-T1 Valid prediction for snap_scaffold_16-snap.544-T1 Valid prediction for GeneMark_model.66461_t Valid prediction for snap_scaffold_16-snap.605-T1 Valid prediction for GeneMark_model.66539_t Valid prediction for GeneMark_model.66578_t Valid prediction for GeneMark_model.66506_t Valid prediction for snap_scaffold_16-snap.590-T1 Valid prediction for GeneMark_model.66469_t Valid prediction for GeneMark_model.66494_t Valid prediction for Augustus_model.g26081.t1 Valid prediction for GeneMark_model.66565_t Valid prediction for GeneMark_model.66551_t Valid prediction for GlimmerHMM_glimmerT_38859-T1 Valid prediction for GlimmerHMM_glimmerT_38863-T1 Valid prediction for Augustus_model.g26102.t1 Valid prediction for snap_scaffold_16-snap.541-T1 Valid prediction for Augustus_model.g26104.t1 Valid prediction for GeneMark_model.66481_t Valid prediction for GeneMark_model.66492_t Valid prediction for Augustus_model.g26100.t1 Valid prediction for snap_scaffold_16-snap.593-T1 Valid prediction for Augustus_model.g26083.t1 Valid prediction for GlimmerHMM_glimmerT_38876-T1 Valid prediction for snap_scaffold_16-snap.585-T1 Valid prediction for GeneMark_model.66556_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5579, rend_intergenic: 5192 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23442, rend_intergenic: 6012 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45195, rend_intergenic: 27319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52976, rend_intergenic: 45231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61793, rend_intergenic: 56592 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72235, rend_intergenic: 64167 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75059, rend_intergenic: 74776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110023, rend_intergenic: 81329 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112751, rend_intergenic: 110177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141644, rend_intergenic: 113161 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151970, rend_intergenic: 142310 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167658, rend_intergenic: 152704 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175417, rend_intergenic: 174132 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178217, rend_intergenic: 176802 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186341, rend_intergenic: 178569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197749, rend_intergenic: 193553 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209198, rend_intergenic: 207266 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227213, rend_intergenic: 217693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 233161, rend_intergenic: 230478 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238550, rend_intergenic: 237188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 248404, rend_intergenic: 238589 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 265340, rend_intergenic: 250332 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 266666, rend_intergenic: 265352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 271313, rend_intergenic: 266754 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 272119, rend_intergenic: 271577 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 274201, rend_intergenic: 272149 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 277556, rend_intergenic: 274554 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 296499, rend_intergenic: 290988 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 300482, rend_intergenic: 297056 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 332953, rend_intergenic: 303963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 346869, rend_intergenic: 333727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 374801, rend_intergenic: 373392 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 380678, rend_intergenic: 375287 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 395393, rend_intergenic: 383668 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 397128 -exon list size: 1665 building trellis 0.1 0.1 0.2 0.2 0.3 0.4 0.4 0.5 0.5 0.6 0.7 0.7 0.8 0.8 0.9 1.0 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.7 1.8 1.9 1.9 2.0 2.0 2.1 2.2 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.6 2.7 2.8 2.8 2.9 2.9 3.0 3.1 3.1 3.2 3.2 3.3 3.4 3.4 3.5 3.5 3.6 3.7 3.7 3.8 3.8 3.9 4.0 4.0 4.1 4.1 4.2 4.3 4.3 4.4 4.4 4.5 4.6 4.6 4.7 4.7 4.8 4.9 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.3 5.4 5.5 5.5 5.6 5.6 5.7 5.8 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.2 6.3 6.4 6.4 6.5 6.5 6.6 6.7 6.7 6.8 6.8 6.9 7.0 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.7 7.8 7.9 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.6 8.7 8.8 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.2 9.3 9.4 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.1 10.2 10.3 10.3 10.4 10.4 10.5 10.6 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.0 11.1 11.2 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.6 11.7 11.8 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.2 12.3 12.4 12.4 12.5 12.5 12.6 12.7 12.7 12.8 12.8 12.9 13.0 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.4 13.5 13.6 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.3 14.4 14.5 14.5 14.6 14.6 14.7 14.8 14.8 14.9 14.9 15.0 15.1 15.1 15.2 15.2 15.3 15.4 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.8 15.9 16.0 16.0 16.1 16.1 16.2 16.3 16.3 16.4 16.4 16.5 16.6 16.6 16.7 16.7 16.8 16.9 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.3 17.4 17.5 17.5 17.6 17.6 17.7 17.8 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.2 18.3 18.4 18.4 18.5 18.5 18.6 18.7 18.7 18.8 18.8 18.9 19.0 19.0 19.1 19.1 19.2 19.3 19.3 19.4 19.4 19.5 19.6 19.6 19.7 19.7 19.8 19.9 19.9 20.0 20.0 20.1 20.2 20.2 20.3 20.3 20.4 20.5 20.5 20.6 20.6 20.7 20.8 20.8 20.9 20.9 21.0 21.1 21.1 21.2 21.2 21.3 21.4 21.4 21.5 21.5 21.6 21.7 21.7 21.8 21.8 21.9 22.0 22.0 22.1 22.1 22.2 22.3 22.3 22.4 22.4 22.5 22.6 22.6 22.7 22.7 22.8 22.9 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.3 23.4 23.5 23.5 23.6 23.6 23.7 23.8 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.2 24.3 24.4 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.8 24.9 25.0 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.7 25.8 25.9 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.3 26.4 26.5 26.5 26.6 26.6 26.7 26.8 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.2 27.3 27.4 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.1 28.2 28.3 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.7 28.8 28.9 28.9 29.0 29.0 29.1 29.2 29.2 29.3 29.3 29.4 29.5 29.5 29.6 29.6 29.7 29.8 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.5 30.6 30.7 30.7 30.8 30.8 30.9 31.0 31.0 31.1 31.1 31.2 31.3 31.3 31.4 31.4 31.5 31.6 31.6 31.7 31.7 31.8 31.9 31.9 32.0 32.0 32.1 32.2 32.2 32.3 32.3 32.4 32.5 32.5 32.6 32.6 32.7 32.8 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.2 33.3 33.4 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.8 33.9 34.0 34.0 34.1 34.1 34.2 34.3 34.3 34.4 34.4 34.5 34.6 34.6 34.7 34.7 34.8 34.9 34.9 35.0 35.0 35.1 35.2 35.2 35.3 35.3 35.4 35.5 35.5 35.6 35.6 35.7 35.8 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.5 36.6 36.7 36.7 36.8 36.8 36.9 37.0 37.0 37.1 37.1 37.2 37.3 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.7 37.8 37.9 37.9 38.0 38.0 38.1 38.2 38.2 38.3 38.3 38.4 38.5 38.5 38.6 38.6 38.7 38.8 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.5 39.6 39.7 39.7 39.8 39.8 39.9 40.0 40.0 40.1 40.1 40.2 40.3 40.3 40.4 40.4 40.5 40.6 40.6 40.7 40.7 40.8 40.9 40.9 41.0 41.0 41.1 41.2 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.6 41.7 41.8 41.8 41.9 41.9 42.0 42.1 42.1 42.2 42.2 42.3 42.4 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.8 42.9 43.0 43.0 43.1 43.1 43.2 43.3 43.3 43.4 43.4 43.5 43.6 43.6 43.7 43.7 43.8 43.9 43.9 44.0 44.0 44.1 44.2 44.2 44.3 44.3 44.4 44.5 44.5 44.6 44.6 44.7 44.8 44.8 44.9 44.9 45.0 45.1 45.1 45.2 45.2 45.3 45.4 45.4 45.5 45.5 45.6 45.7 45.7 45.8 45.8 45.9 46.0 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.4 46.5 46.6 46.6 46.7 46.7 46.8 46.9 46.9 47.0 47.0 47.1 47.2 47.2 47.3 47.3 47.4 47.5 47.5 47.6 47.6 47.7 47.8 47.8 47.9 47.9 48.0 48.1 48.1 48.2 48.2 48.3 48.4 48.4 48.5 48.5 48.6 48.7 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.1 49.2 49.3 49.3 49.4 49.4 49.5 49.6 49.6 49.7 49.7 49.8 49.9 49.9 50.0 50.0 50.1 50.1 50.2 50.3 50.3 50.4 50.4 50.5 50.6 50.6 50.7 50.7 50.8 50.9 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.3 51.4 51.5 51.5 51.6 51.6 51.7 51.8 51.8 51.9 51.9 52.0 52.1 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.5 52.6 52.7 52.7 52.8 52.8 52.9 53.0 53.0 53.1 53.1 53.2 53.3 53.3 53.4 53.4 53.5 53.6 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.0 54.1 54.2 54.2 54.3 54.3 54.4 54.5 54.5 54.6 54.6 54.7 54.8 54.8 54.9 54.9 55.0 55.1 55.1 55.2 55.2 55.3 55.4 55.4 55.5 55.5 55.6 55.7 55.7 55.8 55.8 55.9 56.0 56.0 56.1 56.1 56.2 56.3 56.3 56.4 56.4 56.5 56.6 56.6 56.7 56.7 56.8 56.9 56.9 57.0 57.0 57.1 57.2 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.6 57.7 57.8 57.8 57.9 57.9 58.0 58.1 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.8 58.9 59.0 59.0 59.1 59.1 59.2 59.3 59.3 59.4 59.4 59.5 59.6 59.6 59.7 59.7 59.8 59.9 59.9 60.0 60.0 60.1 60.2 60.2 60.3 60.3 60.4 60.5 60.5 60.6 60.6 60.7 60.8 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.5 61.6 61.7 61.7 61.8 61.8 61.9 62.0 62.0 62.1 62.1 62.2 62.3 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.7 62.8 62.9 62.9 63.0 63.0 63.1 63.2 63.2 63.3 63.3 63.4 63.5 63.5 63.6 63.6 63.7 63.8 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.2 64.3 64.4 64.4 64.5 64.5 64.6 64.7 64.7 64.8 64.8 64.9 65.0 65.0 65.1 65.1 65.2 65.3 65.3 65.4 65.4 65.5 65.6 65.6 65.7 65.7 65.8 65.9 65.9 66.0 66.0 66.1 66.2 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.6 66.7 66.8 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.5 67.6 67.7 67.7 67.8 67.8 67.9 68.0 68.0 68.1 68.1 68.2 68.3 68.3 68.4 68.4 68.5 68.6 68.6 68.7 68.7 68.8 68.9 68.9 69.0 69.0 69.1 69.2 69.2 69.3 69.3 69.4 69.5 69.5 69.6 69.6 69.7 69.8 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.2 70.3 70.4 70.4 70.5 70.5 70.6 70.7 70.7 70.8 70.8 70.9 71.0 71.0 71.1 71.1 71.2 71.3 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.7 71.8 71.9 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.6 72.7 72.8 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.5 73.6 73.7 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.1 74.2 74.3 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.0 75.1 75.2 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.6 75.7 75.8 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.2 76.3 76.4 76.4 76.5 76.5 76.6 76.7 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.1 77.2 77.3 77.3 77.4 77.4 77.5 77.6 77.6 77.7 77.7 77.8 77.9 77.9 78.0 78.0 78.1 78.2 78.2 78.3 78.3 78.4 78.5 78.5 78.6 78.6 78.7 78.8 78.8 78.9 78.9 79.0 79.1 79.1 79.2 79.2 79.3 79.4 79.4 79.5 79.5 79.6 79.7 79.7 79.8 79.8 79.9 80.0 80.0 80.1 80.1 80.2 80.3 80.3 80.4 80.4 80.5 80.6 80.6 80.7 80.7 80.8 80.9 80.9 81.0 81.0 81.1 81.2 81.2 81.3 81.3 81.4 81.5 81.5 81.6 81.6 81.7 81.8 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.5 82.6 82.7 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.1 83.2 83.3 83.3 83.4 83.4 83.5 83.6 83.6 83.7 83.7 83.8 83.9 83.9 84.0 84.0 84.1 84.2 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.6 84.7 84.8 84.8 84.9 84.9 85.0 85.1 85.1 85.2 85.2 85.3 85.4 85.4 85.5 85.5 85.6 85.7 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.4 86.5 86.6 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.0 87.1 87.2 87.2 87.3 87.3 87.4 87.5 87.5 87.6 87.6 87.7 87.8 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.2 88.3 88.4 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.8 88.9 89.0 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.4 89.5 89.6 89.6 89.7 89.7 89.8 89.9 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.6 90.7 90.8 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.2 91.3 91.4 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.1 92.2 92.3 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.0 93.1 93.2 93.2 93.3 93.3 93.4 93.5 93.5 93.6 93.6 93.7 93.8 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.2 94.3 94.4 94.4 94.5 94.5 94.6 94.7 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.1 95.2 95.3 95.3 95.4 95.4 95.5 95.6 95.6 95.7 95.7 95.8 95.9 95.9 96.0 96.0 96.1 96.2 96.2 96.3 96.3 96.4 96.5 96.5 96.6 96.6 96.7 96.8 96.8 96.9 96.9 97.0 97.1 97.1 97.2 97.2 97.3 97.4 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.8 97.9 98.0 98.0 98.1 98.1 98.2 98.3 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.0 99.1 99.2 99.2 99.3 99.3 99.4 99.5 99.5 99.6 99.6 99.7 99.8 99.8 99.9 99.9 -found 94 predictions from path traversal Error with prediction: snap lend_intergenic: 5579, rend_intergenic: 5192 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23442, rend_intergenic: 6012 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45195, rend_intergenic: 27319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52976, rend_intergenic: 45231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61793, rend_intergenic: 56592 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72235, rend_intergenic: 64167 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75059, rend_intergenic: 74776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110023, rend_intergenic: 81329 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112751, rend_intergenic: 110177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141644, rend_intergenic: 113161 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151970, rend_intergenic: 142310 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167658, rend_intergenic: 152704 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175417, rend_intergenic: 174132 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178217, rend_intergenic: 176802 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186341, rend_intergenic: 178569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197749, rend_intergenic: 193553 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209198, rend_intergenic: 207266 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227213, rend_intergenic: 217693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 233161, rend_intergenic: 230478 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238550, rend_intergenic: 237188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 248404, rend_intergenic: 238589 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 265340, rend_intergenic: 250332 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 266666, rend_intergenic: 265352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 271313, rend_intergenic: 266754 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 272119, rend_intergenic: 271577 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 274201, rend_intergenic: 272149 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 277556, rend_intergenic: 274554 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 296499, rend_intergenic: 290988 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 300482, rend_intergenic: 297056 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 332953, rend_intergenic: 303963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 346869, rend_intergenic: 333727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 374801, rend_intergenic: 373392 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 380678, rend_intergenic: 375287 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 395393, rend_intergenic: 383668 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support