-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_2817326-2904164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_38849-T1
Valid prediction for GeneMark_model.66430_t
Valid prediction for GeneMark_model.66426_t
Valid prediction for snap_scaffold_16-snap.524-T1
Valid prediction for snap_scaffold_16-snap.521-T1
Valid prediction for GeneMark_model.66443_t
Valid prediction for GlimmerHMM_glimmerT_38856-T1
Valid prediction for GeneMark_model.66435_t
Valid prediction for GeneMark_model.66437_t
Valid prediction for GeneMark_model.66424_t
Valid prediction for snap_scaffold_16-snap.531-T1
Valid prediction for GeneMark_model.66445_t
Valid prediction for GeneMark_model.66434_t
Valid prediction for snap_scaffold_16-snap.530-T1
Valid prediction for GeneMark_model.66448_t
Valid prediction for GeneMark_model.66441_t
Valid prediction for GeneMark_model.66450_t
Valid prediction for HiQ_model.g26076.t1
Valid prediction for snap_scaffold_16-snap.528-T1
Valid prediction for CodingQuarry_transcript_19876-T1
Valid prediction for GeneMark_model.66428_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g26077.t1
Valid prediction for GeneMark_model.66423_t
Valid prediction for snap_scaffold_16-snap.537-T1
Valid prediction for GlimmerHMM_glimmerT_38855-T1
Valid prediction for GeneMark_model.66444_t
Valid prediction for snap_scaffold_16-snap.534-T1
Valid prediction for GlimmerHMM_glimmerT_38850-T1
Valid prediction for GeneMark_model.66442_t
Valid prediction for GeneMark_model.66439_t
Valid prediction for GeneMark_model.66436_t
Valid prediction for GeneMark_model.66427_t
Valid prediction for GeneMark_model.66449_t
Valid prediction for GlimmerHMM_glimmerT_38852-T1
Valid prediction for snap_scaffold_16-snap.527-T1
Valid prediction for snap_scaffold_16-snap.535-T1
Valid prediction for snap_scaffold_16-snap.533-T1
Valid prediction for GeneMark_model.66433_t
Valid prediction for snap_scaffold_16-snap.526-T1
Valid prediction for GeneMark_model.66429_t
Valid prediction for GlimmerHMM_glimmerT_38853-T1
Valid prediction for snap_scaffold_16-snap.529-T1
Valid prediction for GeneMark_model.66431_t
Valid prediction for GlimmerHMM_glimmerT_38854-T1
Valid prediction for snap_scaffold_16-snap.525-T1
Valid prediction for snap_scaffold_16-snap.522-T1
Valid prediction for GeneMark_model.66438_t
Valid prediction for snap_scaffold_16-snap.532-T1
Valid prediction for GeneMark_model.66440_t
Valid prediction for GeneMark_model.66447_t
Valid prediction for GeneMark_model.66425_t
Valid prediction for snap_scaffold_16-snap.523-T1
Valid prediction for GeneMark_model.66432_t
Valid prediction for GeneMark_model.66446_t
Valid prediction for Augustus_model.g26079.t1
Valid prediction for Augustus_model.g26078.t1
Valid prediction for GlimmerHMM_glimmerT_38851-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20739, rend_intergenic: 9249  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35975, rend_intergenic: 21538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46557, rend_intergenic: 42338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 86839
-exon list size: 296


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.4    
3.7    
4.0    
4.4    
4.7    
5.0    
5.4    
5.7    
6.0    
6.4    
6.7    
7.0    
7.4    
7.7    
8.1    
8.4    
8.7    
9.1    
9.4    
9.7    
10.1    
10.4    
10.7    
11.1    
11.4    
11.7    
12.1    
12.4    
12.8    
13.1    
13.4    
13.8    
14.1    
14.4    
14.8    
15.1    
15.4    
15.8    
16.1    
16.4    
16.8    
17.1    
17.4    
17.8    
18.1    
18.5    
18.8    
19.1    
19.5    
19.8    
20.1    
20.5    
20.8    
21.1    
21.5    
21.8    
22.1    
22.5    
22.8    
23.2    
23.5    
23.8    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.2    
26.5    
26.8    
27.2    
27.5    
27.9    
28.2    
28.5    
28.9    
29.2    
29.5    
29.9    
30.2    
30.5    
30.9    
31.2    
31.5    
31.9    
32.2    
32.6    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.2    
35.6    
35.9    
36.2    
36.6    
36.9    
37.2    
37.6    
37.9    
38.3    
38.6    
38.9    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.3    
41.6    
41.9    
42.3    
42.6    
43.0    
43.3    
43.6    
44.0    
44.3    
44.6    
45.0    
45.3    
45.6    
46.0    
46.3    
46.6    
47.0    
47.3    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.7    
53.0    
53.4    
53.7    
54.0    
54.4    
54.7    
55.0    
55.4    
55.7    
56.0    
56.4    
56.7    
57.0    
57.4    
57.7    
58.1    
58.4    
58.7    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.1    
61.4    
61.7    
62.1    
62.4    
62.8    
63.1    
63.4    
63.8    
64.1    
64.4    
64.8    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.4    
67.8    
68.1    
68.5    
68.8    
69.1    
69.5    
69.8    
70.1    
70.5    
70.8    
71.1    
71.5    
71.8    
72.1    
72.5    
72.8    
73.2    
73.5    
73.8    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.2    
76.5    
76.8    
77.2    
77.5    
77.9    
78.2    
78.5    
78.9    
79.2    
79.5    
79.9    
80.2    
80.5    
80.9    
81.2    
81.5    
81.9    
82.2    
82.6    
82.9    
83.2    
83.6    
83.9    
84.2    
84.6    
84.9    
85.2    
85.6    
85.9    
86.2    
86.6    
86.9    
87.2    
87.6    
87.9    
88.3    
88.6    
88.9    
89.3    
89.6    
89.9    
90.3    
90.6    
90.9    
91.3    
91.6    
91.9    
92.3    
92.6    
93.0    
93.3    
93.6    
94.0    
94.3    
94.6    
95.0    
95.3    
95.6    
96.0    
96.3    
96.6    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 20739, rend_intergenic: 9249  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35975, rend_intergenic: 21538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46557, rend_intergenic: 42338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 64867 - 86839
-exon list size: 68


building trellis

1.4    
2.9    
4.3    
5.7    
7.1    
8.6    
10.0    
11.4    
12.9    
14.3    
15.7    
17.1    
18.6    
20.0    
21.4    
22.9    
24.3    
25.7    
27.1    
28.6    
30.0    
31.4    
32.9    
34.3    
35.7    
37.1    
38.6    
40.0    
41.4    
42.9    
44.3    
45.7    
47.1    
48.6    
50.0    
51.4    
52.9    
54.3    
55.7    
57.1    
58.6    
60.0    
61.4    
62.9    
64.3    
65.7    
67.1    
68.6    
70.0    
71.4    
72.9    
74.3    
75.7    
77.1    
78.6    
80.0    
81.4    
82.9    
84.3    
85.7    
87.1    
88.6    
90.0    
91.4    
92.9    
94.3    
95.7    
97.1    
98.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 64867 - 80253
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 64867 - 80124
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support