-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_168950-491331 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_38502-T1 Valid prediction for snap_scaffold_16-snap.62-T1 Valid prediction for GeneMark_model.65946_t Valid prediction for pasa_asmbl_16794.p1 Valid prediction for snap_scaffold_16-snap.68-T1 Valid prediction for GlimmerHMM_glimmerT_38508-T1 Couldn't classify 36503, 36586 Couldn't classify 38301, 38387 Sorry, prediction pasa_asmbl_16792.p1 fails validation. (ACT) AG 36503-36586 GT GCG (AGG) AG 36807-36957 GT GGG (GGG) AG 37245-37317 GT GAG (AGA) AG 38023-38077 GT TGG (ACC) AG 38301-38387 AT GCA -recovered pasa_asmbl_16792.p1, internal, 36503, 36586 -recovered pasa_asmbl_16792.p1, internal, 36807, 36957 -recovered pasa_asmbl_16792.p1, internal, 37245, 37317 -recovered pasa_asmbl_16792.p1, internal, 38023, 38077 Valid prediction for GlimmerHMM_glimmerT_38491-T1 Valid prediction for snap_scaffold_16-snap.85-T1 Valid prediction for snap_scaffold_16-snap.65-T1 Valid prediction for GeneMark_model.65956_t Valid prediction for HiQ_model.g25818.t1 Valid prediction for snap_scaffold_16-snap.56-T1 Valid prediction for GeneMark_model.65937_t Valid prediction for GeneMark_model.65943_t Valid prediction for GlimmerHMM_glimmerT_38488-T1 Valid prediction for snap_scaffold_16-snap.73-T1 Valid prediction for pasa_asmbl_16802.p1 Valid prediction for Augustus_model.g25829.t1 Valid prediction for Augustus_model.g25815.t1 Valid prediction for Augustus_model.g25810.t1 Valid prediction for HiQ_model.g25813.t1 Valid prediction for Augustus_model.g25806.t1 Valid prediction for GlimmerHMM_glimmerT_38510-T1 Valid prediction for CodingQuarry_transcript_19838-T1 Valid prediction for snap_scaffold_16-snap.88-T1 Valid prediction for GeneMark_model.65935_t Valid prediction for snap_scaffold_16-snap.50-T1 Valid prediction for Augustus_model.g25812.t1 Valid prediction for GlimmerHMM_glimmerT_38484-T1 Valid prediction for GlimmerHMM_glimmerT_38494-T1 Valid prediction for GeneMark_model.65967_t Valid prediction for GlimmerHMM_glimmerT_38506-T1 Valid prediction for snap_scaffold_16-snap.86-T1 Valid prediction for Augustus_model.g25835.t1 Valid prediction for GeneMark_model.65958_t Valid prediction for snap_scaffold_16-snap.46-T1 Valid prediction for GeneMark_model.65926_t Valid prediction for GlimmerHMM_glimmerT_38507-T1 Valid prediction for GeneMark_model.65955_t Valid prediction for Augustus_model.g25825.t1 Valid prediction for GeneMark_model.65939_t Valid prediction for CodingQuarry_transcript_19833-T1 Valid prediction for Augustus_model.g25823.t1 Valid prediction for pasa_asmbl_16812.p1 Valid prediction for snap_scaffold_16-snap.53-T1 Valid prediction for GeneMark_model.65940_t Couldn't classify 111452, 111624 Couldn't classify 116918, 116936 Sorry, prediction pasa_asmbl_16801.p1 fails validation. (CCT) AC 111452-111624 GT AGG (AGG) AG 111812-111901 GT CAG (GAT) AG 112002-112120 GT GGG (GTC) AG 112205-112276 GT CAG (TGG) AG 112452-112555 GT AGG (TTT) AG 114029-114179 GT AGG (GCC) AG 114251-114316 GT AGG (ACA) AG 114397-114563 GT AGG (GGT) AG 114770-114897 GT AGG (GGA) AG 116691-116846 GT AGG (TGA) AG 116918-116936 GC CAG -recovered pasa_asmbl_16801.p1, internal, 111812, 111901 -recovered pasa_asmbl_16801.p1, internal, 112002, 112120 -recovered pasa_asmbl_16801.p1, internal, 112205, 112276 -recovered pasa_asmbl_16801.p1, internal, 112452, 112555 -recovered pasa_asmbl_16801.p1, internal, 114029, 114179 -recovered pasa_asmbl_16801.p1, internal, 114251, 114316 -recovered pasa_asmbl_16801.p1, internal, 114397, 114563 -recovered pasa_asmbl_16801.p1, internal, 114770, 114897 -recovered pasa_asmbl_16801.p1, internal, 116691, 116846 -recovered pasa_asmbl_16801.p1, internal, 116918, 116936 Valid prediction for snap_scaffold_16-snap.48-T1 Valid prediction for snap_scaffold_16-snap.64-T1 Valid prediction for Augustus_model.g25809.t1 Valid prediction for GlimmerHMM_glimmerT_38495-T1 Valid prediction for GlimmerHMM_glimmerT_38514-T1 Valid prediction for snap_scaffold_16-snap.77-T1 Couldn't classify 117516, 117722 Sorry, prediction pasa_asmbl_16805.p1 fails validation. (CCT) AG 117516-117722 GT AGG (GTT) AG 118007-118189 GT AGG (TGC) AG 118388-118628 GT AGG (GTA) AG 118715-118847 GT AGG (GAC) AG 118949-119096 GT GGG (AAG) AG 119206-119420 GT AGG (GCG) AG 119503-119661 GT GGG (GTT) AG 119778-119925 GT AGG (CGC) AG 120123-120311 GT AGG (CCC) AG 120465-120557 GT CTG (AGC) AG 120728-120897 GT AGG (GAA) AG 121427-121543 GT GTG (GGT) AG 121624-121703 GT AGG (AGG) AG 122067-122277 GT GGG (GAG) AG 122526-122553 AG GAA add_exon() Sorry, pasa_asmbl_16805.p1 118715-118847-terminal-3 is invalid. -recovered pasa_asmbl_16805.p1, terminal, 118715, 118847 -recovered pasa_asmbl_16805.p1, terminal, 122526, 122553 -recovered pasa_asmbl_16805.p1, internal, 117516, 117722 -recovered pasa_asmbl_16805.p1, internal, 118007, 118189 -recovered pasa_asmbl_16805.p1, internal, 118388, 118628 -recovered pasa_asmbl_16805.p1, internal, 118715, 118847 -recovered pasa_asmbl_16805.p1, internal, 118949, 119096 -recovered pasa_asmbl_16805.p1, internal, 119206, 119420 -recovered pasa_asmbl_16805.p1, internal, 119503, 119661 -recovered pasa_asmbl_16805.p1, internal, 119778, 119925 -recovered pasa_asmbl_16805.p1, internal, 120123, 120311 -recovered pasa_asmbl_16805.p1, internal, 120465, 120557 -recovered pasa_asmbl_16805.p1, internal, 120728, 120897 -recovered pasa_asmbl_16805.p1, internal, 121427, 121543 -recovered pasa_asmbl_16805.p1, internal, 121624, 121703 -recovered pasa_asmbl_16805.p1, internal, 122067, 122277 Valid prediction for snap_scaffold_16-snap.66-T1 Valid prediction for GeneMark_model.65929_t Valid prediction for snap_scaffold_16-snap.71-T1 Valid prediction for snap_scaffold_16-snap.75-T1 Valid prediction for GlimmerHMM_glimmerT_38509-T1 Valid prediction for snap_scaffold_16-snap.80-T1 Valid prediction for GlimmerHMM_glimmerT_38492-T1 Valid prediction for GlimmerHMM_glimmerT_38496-T1 Valid prediction for snap_scaffold_16-snap.87-T1 Valid prediction for snap_scaffold_16-snap.63-T1 Valid prediction for snap_scaffold_16-snap.67-T1 Valid prediction for Augustus_model.g25834.t1 Valid prediction for GlimmerHMM_glimmerT_38500-T1 Valid prediction for snap_scaffold_16-snap.33-T1 Valid prediction for GlimmerHMM_glimmerT_38515-T1 Valid prediction for Augustus_model.g25804.t1 Valid prediction for HiQ_model.g25805.t1 Valid prediction for GeneMark_model.65954_t Valid prediction for GlimmerHMM_glimmerT_38486-T1 Valid prediction for GeneMark_model.65927_t Valid prediction for GeneMark_model.65962_t Valid prediction for GlimmerHMM_glimmerT_38505-T1 Valid prediction for snap_scaffold_16-snap.44-T1 Valid prediction for CodingQuarry_transcript_19837-T1 Valid prediction for GlimmerHMM_glimmerT_38498-T1 Valid prediction for GlimmerHMM_glimmerT_38521-T1 Valid prediction for GeneMark_model.65932_t Valid prediction for snap_scaffold_16-snap.40-T1 Valid prediction for snap_scaffold_16-snap.47-T1 Valid prediction for GeneMark_model.65969_t Valid prediction for snap_scaffold_16-snap.37-T1 Valid prediction for snap_scaffold_16-snap.41-T1 Valid prediction for snap_scaffold_16-snap.59-T1 Valid prediction for snap_scaffold_16-snap.34-T1 Valid prediction for CodingQuarry_transcript_19832-T1 Valid prediction for snap_scaffold_16-snap.74-T1 Valid prediction for Augustus_model.g25833.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.45-T1 Valid prediction for snap_scaffold_16-snap.42-T1 Valid prediction for GlimmerHMM_glimmerT_38485-T1 Valid prediction for GeneMark_model.65963_t Valid prediction for pasa_asmbl_16033.p1 Valid prediction for pasa_asmbl_16014.p1 Valid prediction for GlimmerHMM_glimmerT_38518-T1 Valid prediction for Augustus_model.g25808.t1 Valid prediction for GeneMark_model.65938_t Valid prediction for GlimmerHMM_glimmerT_38487-T1 Valid prediction for snap_scaffold_16-snap.57-T1 Valid prediction for snap_scaffold_16-snap.32-T1 Valid prediction for snap_scaffold_16-snap.60-T1 Valid prediction for Augustus_model.g25821.t1 Valid prediction for GeneMark_model.65951_t Valid prediction for GeneMark_model.65965_t Valid prediction for GlimmerHMM_glimmerT_38519-T1 Valid prediction for GeneMark_model.65970_t Valid prediction for snap_scaffold_16-snap.69-T1 Valid prediction for GeneMark_model.65930_t Valid prediction for GlimmerHMM_glimmerT_38489-T1 Valid prediction for Augustus_model.g25824.t1 Couldn't classify 47345, 47513 Sorry, prediction pasa_asmbl_16038.p1 fails validation. (GAT) TA 47345-47513 GT AGG (GTA) AG 48699-48767 GC TGG (GCC) AG 49341-49517 GT CGG (ATC) AG 51609-51653 GT AGG (GGC) AG 52136-54000 CA GAC -recovered pasa_asmbl_16038.p1, terminal, 52136, 54000 -recovered pasa_asmbl_16038.p1, internal, 48699, 48767 -recovered pasa_asmbl_16038.p1, internal, 49341, 49517 -recovered pasa_asmbl_16038.p1, internal, 51609, 51653 Valid prediction for snap_scaffold_16-snap.51-T1 Valid prediction for snap_scaffold_16-snap.82-T1 Couldn't classify 187634, 187783 Sorry, prediction pasa_asmbl_16017.p1 fails validation. (ATC) GT 187634-187783 GT TGG (GTC) AG 187878-188006 GT AGG (CTG) AG 188234-188375 GT AGG (AGT) AG 188459-188622 GT GAG -recovered pasa_asmbl_16017.p1, terminal, 188459, 188622 -recovered pasa_asmbl_16017.p1, internal, 187878, 188006 -recovered pasa_asmbl_16017.p1, internal, 188234, 188375 -recovered pasa_asmbl_16017.p1, internal, 188459, 188622 Valid prediction for GlimmerHMM_glimmerT_38493-T1 Valid prediction for GlimmerHMM_glimmerT_38483-T1 Valid prediction for snap_scaffold_16-snap.43-T1 Valid prediction for GeneMark_model.65941_t Valid prediction for snap_scaffold_16-snap.78-T1 Valid prediction for GeneMark_model.65945_t Valid prediction for CodingQuarry_transcript_19843-T1 Valid prediction for Augustus_model.g25822.t1 Valid prediction for GlimmerHMM_glimmerT_38520-T1 Valid prediction for GeneMark_model.65950_t Valid prediction for GlimmerHMM_glimmerT_38516-T1 Valid prediction for CodingQuarry_transcript_19844-T1 Couldn't classify 163521, 163522 Sorry, prediction CodingQuarry_transcript_19841-T1 fails validation. (ATG) GG 163521-163522 GT ATG (GTG) AG 163699-163814 GT CGG (GCA) AG 164182-164303 GT AGG (GAA) AG 164393-164515 GT AGG (GTT) AG 164574-164761 GT AGG (AGA) AG 164878-165022 GT AGG (GGA) AG 165123-165266 GT AGG (CTT) AG 165396-165581 GT AGG (ACG) AG 165828-165942 GT TGG (ATT) AG 166239-166321 CA GAC add_exon() Sorry, CodingQuarry_transcript_19841-T1 164574-164761-terminal-2 is invalid. -recovered CodingQuarry_transcript_19841-T1, terminal, 164574, 164761 -recovered CodingQuarry_transcript_19841-T1, terminal, 166239, 166321 -recovered CodingQuarry_transcript_19841-T1, internal, 163699, 163814 -recovered CodingQuarry_transcript_19841-T1, internal, 164182, 164303 -recovered CodingQuarry_transcript_19841-T1, internal, 164393, 164515 -recovered CodingQuarry_transcript_19841-T1, internal, 164574, 164761 -recovered CodingQuarry_transcript_19841-T1, internal, 164878, 165022 -recovered CodingQuarry_transcript_19841-T1, internal, 165123, 165266 -recovered CodingQuarry_transcript_19841-T1, internal, 165396, 165581 -recovered CodingQuarry_transcript_19841-T1, internal, 165828, 165942 Valid prediction for GlimmerHMM_glimmerT_38482-T1 Valid prediction for snap_scaffold_16-snap.61-T1 Sorry, intron length (9) is less than minimum required (10) Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.65936_t Valid prediction for HiQ_model.g25816.t1 Valid prediction for CodingQuarry_transcript_19836-T1 Valid prediction for HiQ_model.g25832.t1 Couldn't classify 163521, 163522 Sorry, prediction CodingQuarry_transcript_19840-T1 fails validation. (ATG) GG 163521-163522 GT ATG (GTG) AG 163699-163814 GT CGG (GCA) AG 164182-164303 GT AGG (GAA) AG 164393-164515 GT AGG (GTT) AG 164574-164761 GT AGG (AGA) AG 164878-165022 GT AGG (GGA) AG 165123-165266 GT AGG (CTT) AG 165396-165581 GT AGG (ACG) AG 165828-165942 GT TGG (CTG) AG 166027-166154 GT AGG (ATT) AG 166239-166333 GT AGG (GCA) AG 166411-166560 GT TGG (GTG) AG 166634-166736 TT GAT add_exon() Sorry, CodingQuarry_transcript_19840-T1 164574-164761-terminal-2 is invalid. -recovered CodingQuarry_transcript_19840-T1, terminal, 164574, 164761 -recovered CodingQuarry_transcript_19840-T1, terminal, 166634, 166736 -recovered CodingQuarry_transcript_19840-T1, internal, 163699, 163814 -recovered CodingQuarry_transcript_19840-T1, internal, 164182, 164303 -recovered CodingQuarry_transcript_19840-T1, internal, 164393, 164515 -recovered CodingQuarry_transcript_19840-T1, internal, 164574, 164761 -recovered CodingQuarry_transcript_19840-T1, internal, 164878, 165022 -recovered CodingQuarry_transcript_19840-T1, internal, 165123, 165266 -recovered CodingQuarry_transcript_19840-T1, internal, 165396, 165581 -recovered CodingQuarry_transcript_19840-T1, internal, 165828, 165942 -recovered CodingQuarry_transcript_19840-T1, internal, 166027, 166154 -recovered CodingQuarry_transcript_19840-T1, internal, 166239, 166333 -recovered CodingQuarry_transcript_19840-T1, internal, 166411, 166560 Valid prediction for snap_scaffold_16-snap.54-T1 Valid prediction for GeneMark_model.65957_t Couldn't classify 225854, 226999 Sorry, prediction pasa_asmbl_16013.p1 fails validation. (GAC) CA 225854-226999 TT AGT Valid prediction for CodingQuarry_transcript_19834-T1 Valid prediction for GeneMark_model.65968_t Valid prediction for snap_scaffold_16-snap.79-T1 Couldn't classify 163521, 163522 Sorry, prediction CodingQuarry_transcript_19839-T1 fails validation. (ATG) GG 163521-163522 GT ATG (GTG) AG 163699-163814 GT CGG (GCA) AG 164182-164303 GT AGG (GAA) AG 164393-164515 GT AGG (GTT) AG 164574-164761 GT AGG (AGA) AG 164878-165022 GT AGG (GGA) AG 165123-165266 GT AGG (CTT) AG 165396-165581 GT AGG (GTC) AG 165663-165731 GT ACG (ACG) AG 165828-165942 GT TGG (CTG) AG 166027-166154 GT AGG (ATT) AG 166239-166333 GT AGG (GCA) AG 166411-166560 GT TGG (GTG) AG 166634-166736 TT GAT add_exon() Sorry, CodingQuarry_transcript_19839-T1 164574-164761-terminal-2 is invalid. -recovered CodingQuarry_transcript_19839-T1, terminal, 164574, 164761 -recovered CodingQuarry_transcript_19839-T1, terminal, 166634, 166736 -recovered CodingQuarry_transcript_19839-T1, internal, 163699, 163814 -recovered CodingQuarry_transcript_19839-T1, internal, 164182, 164303 -recovered CodingQuarry_transcript_19839-T1, internal, 164393, 164515 -recovered CodingQuarry_transcript_19839-T1, internal, 164574, 164761 -recovered CodingQuarry_transcript_19839-T1, internal, 164878, 165022 -recovered CodingQuarry_transcript_19839-T1, internal, 165123, 165266 -recovered CodingQuarry_transcript_19839-T1, internal, 165396, 165581 -recovered CodingQuarry_transcript_19839-T1, internal, 165663, 165731 -recovered CodingQuarry_transcript_19839-T1, internal, 165828, 165942 -recovered CodingQuarry_transcript_19839-T1, internal, 166027, 166154 -recovered CodingQuarry_transcript_19839-T1, internal, 166239, 166333 -recovered CodingQuarry_transcript_19839-T1, internal, 166411, 166560 Valid prediction for snap_scaffold_16-snap.49-T1 Valid prediction for HiQ_model.g25817.t1 Valid prediction for HiQ_model.g25830.t1 Valid prediction for Augustus_model.g25820.t1 Valid prediction for snap_scaffold_16-snap.52-T1 Valid prediction for GlimmerHMM_glimmerT_38490-T1 Valid prediction for GeneMark_model.65944_t Valid prediction for CodingQuarry_transcript_19835-T1 Valid prediction for GeneMark_model.65942_t Valid prediction for GlimmerHMM_glimmerT_38497-T1 Valid prediction for HiQ_model.g25814.t1 Valid prediction for GeneMark_model.65953_t Valid prediction for GeneMark_model.65961_t Valid prediction for GlimmerHMM_glimmerT_38501-T1 Valid prediction for Augustus_model.g25831.t1 Valid prediction for snap_scaffold_16-snap.70-T1 Valid prediction for pasa_asmbl_16025.p1 Valid prediction for snap_scaffold_16-snap.58-T1 Valid prediction for GeneMark_model.65934_t Valid prediction for GeneMark_model.65931_t Valid prediction for GlimmerHMM_glimmerT_38512-T1 Valid prediction for CodingQuarry_transcript_19845-T1 Valid prediction for snap_scaffold_16-snap.76-T1 Valid prediction for snap_scaffold_16-snap.35-T1 Valid prediction for snap_scaffold_16-snap.81-T1 Valid prediction for snap_scaffold_16-snap.38-T1 Valid prediction for snap_scaffold_16-snap.83-T1 Valid prediction for GeneMark_model.65924_t Valid prediction for snap_scaffold_16-snap.55-T1 Valid prediction for HiQ_model.g25826.t1 Valid prediction for GlimmerHMM_glimmerT_38499-T1 Valid prediction for GlimmerHMM_glimmerT_38517-T1 Couldn't classify 74866, 75117 Sorry, prediction pasa_asmbl_16037.p1 fails validation. (TTG) GA 74866-75117 GT ATG (ATG) AG 75197-75277 GT AGG (GTG) AG 75391-75480 GT CGG (TTC) AG 75591-75698 GT AGG (ATC) AG 75783-75893 TG AGT -recovered pasa_asmbl_16037.p1, initial, 75197, 75277 -recovered pasa_asmbl_16037.p1, terminal, 75783, 75893 -recovered pasa_asmbl_16037.p1, internal, 75197, 75277 -recovered pasa_asmbl_16037.p1, internal, 75391, 75480 -recovered pasa_asmbl_16037.p1, internal, 75591, 75698 Valid prediction for HiQ_model.g25827.t1 Valid prediction for Augustus_model.g25811.t1 Valid prediction for GeneMark_model.65960_t Valid prediction for snap_scaffold_16-snap.31-T1 Valid prediction for GeneMark_model.65966_t Valid prediction for pasa_asmbl_16023.p1 Valid prediction for snap_scaffold_16-snap.39-T1 Valid prediction for GlimmerHMM_glimmerT_38513-T1 Valid prediction for GlimmerHMM_glimmerT_38503-T1 Valid prediction for GlimmerHMM_glimmerT_38504-T1 Valid prediction for GeneMark_model.65949_t Valid prediction for Augustus_model.g25819.t1 Valid prediction for snap_scaffold_16-snap.36-T1 Valid prediction for Augustus_model.g25807.t1 Valid prediction for snap_scaffold_16-snap.84-T1 Valid prediction for Augustus_model.g25828.t1 Valid prediction for snap_scaffold_16-snap.72-T1 Valid prediction for GeneMark_model.65959_t Valid prediction for Augustus_model.g25803.t1 Valid prediction for GlimmerHMM_glimmerT_38511-T1 Valid prediction for GeneMark_model.65964_t Valid prediction for GeneMark_model.65947_t Couldn't classify 47345, 47513 Sorry, prediction pasa_asmbl_16043.p2 fails validation. (GAT) TA 47345-47513 GT AGG (GTA) AG 48699-48767 GC TGG (ATG) AG 50587-50631 GT AGG (ATC) AG 51609-51653 GT AGG (GGC) AG 52136-52263 GT AGG (GAC) AG 55168-55173 AA GAA -recovered pasa_asmbl_16043.p2, initial, 50587, 50631 -recovered pasa_asmbl_16043.p2, terminal, 55168, 55173 -recovered pasa_asmbl_16043.p2, internal, 48699, 48767 -recovered pasa_asmbl_16043.p2, internal, 50587, 50631 -recovered pasa_asmbl_16043.p2, internal, 51609, 51653 -recovered pasa_asmbl_16043.p2, internal, 52136, 52263 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 50276, rend_intergenic: 47693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100364, rend_intergenic: 97937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107265, rend_intergenic: 103712 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122687, rend_intergenic: 122128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172621, rend_intergenic: 167366 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178099, rend_intergenic: 174697 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249087, rend_intergenic: 246490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260082, rend_intergenic: 254624 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270270, rend_intergenic: 268383 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 301573, rend_intergenic: 301157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 322382 -exon list size: 883 building trellis 0.1 0.2 0.3 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.7 99.8 99.9 -found 44 predictions from path traversal Error with prediction: snap lend_intergenic: 50276, rend_intergenic: 47693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100364, rend_intergenic: 97937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107265, rend_intergenic: 103712 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122687, rend_intergenic: 122128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172621, rend_intergenic: 167366 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178099, rend_intergenic: 174697 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249087, rend_intergenic: 246490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260082, rend_intergenic: 254624 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270270, rend_intergenic: 268383 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 301573, rend_intergenic: 301157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 38 predictions persist after filtering for low support