-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_14862203-15048660

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.69526_t
Valid prediction for snap_scaffold_16-snap.2901-T1
Valid prediction for GeneMark_model.69498_t
Valid prediction for snap_scaffold_16-snap.2923-T1
Valid prediction for snap_scaffold_16-snap.2894-T1
Valid prediction for GeneMark_model.69492_t
Valid prediction for GeneMark_model.69500_t
Valid prediction for GeneMark_model.69531_t
Valid prediction for GeneMark_model.69530_t
Valid prediction for GeneMark_model.69540_t
Valid prediction for snap_scaffold_16-snap.2892-T1
Valid prediction for GeneMark_model.69490_t
Valid prediction for snap_scaffold_16-snap.2885-T1
Valid prediction for snap_scaffold_16-snap.2913-T1
Valid prediction for GeneMark_model.69514_t
Valid prediction for GeneMark_model.69528_t
Valid prediction for GeneMark_model.69512_t
Valid prediction for GeneMark_model.69543_t
Valid prediction for GeneMark_model.69521_t
Valid prediction for snap_scaffold_16-snap.2917-T1
Valid prediction for GeneMark_model.69499_t
Valid prediction for snap_scaffold_16-snap.2898-T1
Valid prediction for GeneMark_model.69520_t
Valid prediction for GeneMark_model.69508_t
Valid prediction for GeneMark_model.69486_t
Valid prediction for GlimmerHMM_glimmerT_40384-T1
Valid prediction for snap_scaffold_16-snap.2909-T1
Valid prediction for snap_scaffold_16-snap.2921-T1
Valid prediction for Augustus_model.g27091.t1
Valid prediction for snap_scaffold_16-snap.2903-T1
Valid prediction for snap_scaffold_16-snap.2883-T1
Valid prediction for GlimmerHMM_glimmerT_40395-T1
Valid prediction for GeneMark_model.69524_t
Valid prediction for GlimmerHMM_glimmerT_40387-T1
Valid prediction for snap_scaffold_16-snap.2904-T1
Valid prediction for GeneMark_model.69504_t
Valid prediction for GlimmerHMM_glimmerT_40391-T1
Valid prediction for GeneMark_model.69533_t
Valid prediction for GlimmerHMM_glimmerT_40382-T1
Valid prediction for snap_scaffold_16-snap.2915-T1
Valid prediction for GeneMark_model.69523_t
Valid prediction for snap_scaffold_16-snap.2890-T1
Valid prediction for GlimmerHMM_glimmerT_40398-T1
Valid prediction for Augustus_model.g27093.t1
Valid prediction for snap_scaffold_16-snap.2919-T1
Valid prediction for GeneMark_model.69502_t
Valid prediction for GlimmerHMM_glimmerT_40373-T1
Valid prediction for GeneMark_model.69510_t
Valid prediction for GlimmerHMM_glimmerT_40371-T1
Valid prediction for GeneMark_model.69536_t
Valid prediction for GeneMark_model.69518_t
Valid prediction for GeneMark_model.69488_t
Valid prediction for snap_scaffold_16-snap.2906-T1
Valid prediction for GeneMark_model.69506_t
Valid prediction for GeneMark_model.69496_t
Valid prediction for snap_scaffold_16-snap.2886-T1
Valid prediction for GlimmerHMM_glimmerT_40377-T1
Valid prediction for GeneMark_model.69538_t
Valid prediction for GlimmerHMM_glimmerT_40401-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2920-T1
Valid prediction for GeneMark_model.69494_t
Valid prediction for GlimmerHMM_glimmerT_40380-T1
Valid prediction for GeneMark_model.69511_t
Valid prediction for GeneMark_model.69509_t
Valid prediction for snap_scaffold_16-snap.2884-T1
Valid prediction for GeneMark_model.69485_t
Valid prediction for GlimmerHMM_glimmerT_40381-T1
Valid prediction for snap_scaffold_16-snap.2889-T1
Valid prediction for GeneMark_model.69537_t
Valid prediction for snap_scaffold_16-snap.2888-T1
Valid prediction for GlimmerHMM_glimmerT_40372-T1
Valid prediction for snap_scaffold_16-snap.2914-T1
Valid prediction for GlimmerHMM_glimmerT_40386-T1
Valid prediction for GeneMark_model.69532_t
Valid prediction for snap_scaffold_16-snap.2893-T1
Valid prediction for GlimmerHMM_glimmerT_40375-T1
Valid prediction for GeneMark_model.69539_t
Valid prediction for GlimmerHMM_glimmerT_40388-T1
Valid prediction for GeneMark_model.69541_t
Valid prediction for GlimmerHMM_glimmerT_40393-T1
Valid prediction for GlimmerHMM_glimmerT_40394-T1
Valid prediction for GeneMark_model.69487_t
Valid prediction for Augustus_model.g27090.t1
Valid prediction for GeneMark_model.69516_t
Valid prediction for GlimmerHMM_glimmerT_40390-T1
Valid prediction for GeneMark_model.69497_t
Valid prediction for GlimmerHMM_glimmerT_40389-T1
Valid prediction for snap_scaffold_16-snap.2895-T1
Valid prediction for GeneMark_model.69534_t
Valid prediction for snap_scaffold_16-snap.2905-T1
Valid prediction for snap_scaffold_16-snap.2907-T1
Valid prediction for snap_scaffold_16-snap.2916-T1
Valid prediction for snap_scaffold_16-snap.2922-T1
Valid prediction for GeneMark_model.69522_t
Valid prediction for GeneMark_model.69489_t
Valid prediction for Augustus_model.g27092.t1
Valid prediction for GlimmerHMM_glimmerT_40400-T1
Valid prediction for GeneMark_model.69501_t
Valid prediction for GlimmerHMM_glimmerT_40396-T1
Valid prediction for snap_scaffold_16-snap.2912-T1
Valid prediction for GeneMark_model.69491_t
Valid prediction for GeneMark_model.69513_t
Valid prediction for snap_scaffold_16-snap.2887-T1
Valid prediction for snap_scaffold_16-snap.2925-T1
Valid prediction for GeneMark_model.69529_t
Valid prediction for GlimmerHMM_glimmerT_40376-T1
Valid prediction for snap_scaffold_16-snap.2891-T1
Valid prediction for GlimmerHMM_glimmerT_40378-T1
Valid prediction for GeneMark_model.69535_t
Valid prediction for snap_scaffold_16-snap.2902-T1
Valid prediction for GeneMark_model.69505_t
Valid prediction for GlimmerHMM_glimmerT_40374-T1
Valid prediction for snap_scaffold_16-snap.2918-T1
Valid prediction for GlimmerHMM_glimmerT_40383-T1
Valid prediction for snap_scaffold_16-snap.2911-T1
Valid prediction for GeneMark_model.69544_t
Valid prediction for GlimmerHMM_glimmerT_40392-T1
Valid prediction for GeneMark_model.69519_t
Valid prediction for GeneMark_model.69507_t
Valid prediction for GeneMark_model.69527_t
Valid prediction for GlimmerHMM_glimmerT_40379-T1
Valid prediction for snap_scaffold_16-snap.2896-T1
Valid prediction for GlimmerHMM_glimmerT_40385-T1
Valid prediction for GlimmerHMM_glimmerT_40399-T1
Valid prediction for snap_scaffold_16-snap.2897-T1
Valid prediction for snap_scaffold_16-snap.2910-T1
Valid prediction for GeneMark_model.69503_t
Valid prediction for snap_scaffold_16-snap.2900-T1
Valid prediction for GeneMark_model.69517_t
Valid prediction for snap_scaffold_16-snap.2908-T1
Valid prediction for GeneMark_model.69515_t
Valid prediction for snap_scaffold_16-snap.2899-T1
Valid prediction for snap_scaffold_16-snap.2924-T1
Valid prediction for GlimmerHMM_glimmerT_40397-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7460, rend_intergenic: 7201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32110, rend_intergenic: 16376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38180, rend_intergenic: 37964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43475, rend_intergenic: 38213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51908, rend_intergenic: 50134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56024, rend_intergenic: 52150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63610, rend_intergenic: 56346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65229, rend_intergenic: 63959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75737, rend_intergenic: 65448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77314, rend_intergenic: 75805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86519, rend_intergenic: 79929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102280, rend_intergenic: 100663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112160, rend_intergenic: 104820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114111, rend_intergenic: 112395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137505, rend_intergenic: 136005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142285, rend_intergenic: 140468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144321, rend_intergenic: 142392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154905, rend_intergenic: 144634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167431, rend_intergenic: 164244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169584, rend_intergenic: 167507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171133, rend_intergenic: 170096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185618, rend_intergenic: 172966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186458
-exon list size: 723


building trellis

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80.6    
80.7    
80.8    
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81.8    
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82.6    
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92.8    
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96.0    
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99.0    
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99.3    
99.4    
99.6    
99.7    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 7460, rend_intergenic: 7201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32110, rend_intergenic: 16376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38180, rend_intergenic: 37964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43475, rend_intergenic: 38213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51908, rend_intergenic: 50134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56024, rend_intergenic: 52150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63610, rend_intergenic: 56346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65229, rend_intergenic: 63959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75737, rend_intergenic: 65448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77314, rend_intergenic: 75805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86519, rend_intergenic: 79929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102280, rend_intergenic: 100663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112160, rend_intergenic: 104820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114111, rend_intergenic: 112395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137505, rend_intergenic: 136005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142285, rend_intergenic: 140468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144321, rend_intergenic: 142392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154905, rend_intergenic: 144634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167431, rend_intergenic: 164244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169584, rend_intergenic: 167507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171133, rend_intergenic: 170096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185618, rend_intergenic: 172966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support