-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_14138855-14481677

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.69359_t
Valid prediction for snap_scaffold_16-snap.2742-T1
Valid prediction for GeneMark_model.69259_t
Valid prediction for GeneMark_model.69354_t
Valid prediction for snap_scaffold_16-snap.2743-T1
Valid prediction for snap_scaffold_16-snap.2739-T1
Valid prediction for GeneMark_model.69329_t
Valid prediction for GeneMark_model.69332_t
Valid prediction for GlimmerHMM_glimmerT_40295-T1
Valid prediction for snap_scaffold_16-snap.2775-T1
Couldn't classify 325387, 325498
Couldn't classify 327922, 328517
Sorry, prediction pasa_asmbl_17481.p1 fails validation.
(GGT)	 CA	325387-325498	GT	TGG
(ATT)	 AG	326025-326204	GT	AGG
(GTG)	 AG	327922-328517	CC	CCC
-recovered pasa_asmbl_17481.p1, internal, 326025, 326204
Valid prediction for GeneMark_model.69311_t
Valid prediction for GeneMark_model.69313_t
Valid prediction for snap_scaffold_16-snap.2784-T1
Valid prediction for GeneMark_model.69282_t
Valid prediction for snap_scaffold_16-snap.2750-T1
Valid prediction for snap_scaffold_16-snap.2780-T1
Valid prediction for GeneMark_model.69277_t
Valid prediction for snap_scaffold_16-snap.2779-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.69339_t
Valid prediction for Augustus_model.g27039.t1
Valid prediction for GeneMark_model.69315_t
Valid prediction for snap_scaffold_16-snap.2766-T1
Couldn't classify 82103, 82474
Sorry, prediction pasa_asmbl_16621.p1 fails validation.
(TCG)	 CC	82103-82474	TC	TCT
Valid prediction for GeneMark_model.69352_t
Valid prediction for GeneMark_model.69365_t
Valid prediction for GeneMark_model.69378_t
Valid prediction for GeneMark_model.69368_t
Valid prediction for snap_scaffold_16-snap.2786-T1
Valid prediction for GeneMark_model.69325_t
Valid prediction for GeneMark_model.69331_t
Valid prediction for GeneMark_model.69275_t
Valid prediction for GeneMark_model.69321_t
Valid prediction for snap_scaffold_16-snap.2732-T1
Valid prediction for GeneMark_model.69343_t
Valid prediction for Augustus_model.g27040.t1
Valid prediction for Augustus_model.g27032.t1
Valid prediction for snap_scaffold_16-snap.2736-T1
Valid prediction for GeneMark_model.69346_t
Valid prediction for GeneMark_model.69298_t
Valid prediction for GlimmerHMM_glimmerT_40306-T1
Valid prediction for GlimmerHMM_glimmerT_40310-T1
Valid prediction for GeneMark_model.69319_t
Valid prediction for GeneMark_model.69302_t
Valid prediction for GlimmerHMM_glimmerT_40299-T1
Valid prediction for GeneMark_model.69281_t
Valid prediction for GeneMark_model.69372_t
Valid prediction for snap_scaffold_16-snap.2769-T1
Valid prediction for GeneMark_model.69291_t
Valid prediction for snap_scaffold_16-snap.2748-T1
Valid prediction for GeneMark_model.69283_t
Valid prediction for snap_scaffold_16-snap.2752-T1
Valid prediction for Augustus_model.g27036.t1
Valid prediction for snap_scaffold_16-snap.2749-T1
Valid prediction for snap_scaffold_16-snap.2754-T1
Valid prediction for GlimmerHMM_glimmerT_40308-T1
Valid prediction for snap_scaffold_16-snap.2734-T1
Valid prediction for GeneMark_model.69344_t
Valid prediction for GlimmerHMM_glimmerT_40302-T1
Valid prediction for GeneMark_model.69337_t
Valid prediction for GeneMark_model.69342_t
Valid prediction for GlimmerHMM_glimmerT_40279-T1
Valid prediction for GeneMark_model.69309_t
Valid prediction for snap_scaffold_16-snap.2777-T1
Valid prediction for GlimmerHMM_glimmerT_40282-T1
Valid prediction for GeneMark_model.69269_t
Valid prediction for GeneMark_model.69258_t
Valid prediction for GeneMark_model.69351_t
Valid prediction for snap_scaffold_16-snap.2787-T1
Valid prediction for snap_scaffold_16-snap.2744-T1
Valid prediction for GeneMark_model.69335_t
Valid prediction for GeneMark_model.69289_t
Valid prediction for snap_scaffold_16-snap.2756-T1
Couldn't classify 328686, 329270
Sorry, prediction pasa_asmbl_17482.p1 fails validation.
(AGT)	 TC	328686-329270	GG	AAG
Valid prediction for GeneMark_model.69327_t
Valid prediction for GeneMark_model.69261_t
Valid prediction for snap_scaffold_16-snap.2745-T1
Valid prediction for GlimmerHMM_glimmerT_40307-T1
Valid prediction for snap_scaffold_16-snap.2771-T1
Valid prediction for GeneMark_model.69340_t
Valid prediction for GeneMark_model.69305_t
Valid prediction for GeneMark_model.69265_t
Valid prediction for GeneMark_model.69285_t
Valid prediction for GeneMark_model.69286_t
Valid prediction for Augustus_model.g27029.t1
Valid prediction for GeneMark_model.69363_t
Valid prediction for GeneMark_model.69380_t
Valid prediction for snap_scaffold_16-snap.2746-T1
Valid prediction for GeneMark_model.69271_t
Valid prediction for GlimmerHMM_glimmerT_40293-T1
Valid prediction for Augustus_model.g27034.t1
Valid prediction for GeneMark_model.69376_t
Valid prediction for GeneMark_model.69361_t
Valid prediction for GlimmerHMM_glimmerT_40283-T1
Valid prediction for GeneMark_model.69356_t
Valid prediction for snap_scaffold_16-snap.2729-T1
Valid prediction for GeneMark_model.69370_t
Valid prediction for Augustus_model.g27033.t1
Valid prediction for GeneMark_model.69348_t
Valid prediction for GeneMark_model.69272_t
Valid prediction for GeneMark_model.69297_t
Valid prediction for snap_scaffold_16-snap.2740-T1
Valid prediction for GeneMark_model.69267_t
Valid prediction for GeneMark_model.69366_t
Valid prediction for GeneMark_model.69374_t
Valid prediction for GeneMark_model.69300_t
Valid prediction for Augustus_model.g27031.t1
Valid prediction for GeneMark_model.69279_t
Valid prediction for GeneMark_model.69263_t
Valid prediction for GlimmerHMM_glimmerT_40288-T1
Valid prediction for GeneMark_model.69307_t
Valid prediction for Augustus_model.g27038.t1
Valid prediction for GlimmerHMM_glimmerT_40298-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.69318_t
Valid prediction for GeneMark_model.69278_t
Valid prediction for GlimmerHMM_glimmerT_40294-T1
Valid prediction for GlimmerHMM_glimmerT_40286-T1
Valid prediction for GeneMark_model.69294_t
Valid prediction for GeneMark_model.69314_t
Valid prediction for GeneMark_model.69360_t
Valid prediction for snap_scaffold_16-snap.2738-T1
Valid prediction for snap_scaffold_16-snap.2768-T1
Valid prediction for GlimmerHMM_glimmerT_40305-T1
Valid prediction for GeneMark_model.69295_t
Valid prediction for GlimmerHMM_glimmerT_40285-T1
Valid prediction for snap_scaffold_16-snap.2751-T1
Valid prediction for GlimmerHMM_glimmerT_40297-T1
Valid prediction for GeneMark_model.69317_t
Valid prediction for GeneMark_model.69288_t
Valid prediction for GeneMark_model.69274_t
Valid prediction for GeneMark_model.69367_t
Valid prediction for Augustus_model.g27026.t1
Valid prediction for GeneMark_model.69293_t
Valid prediction for GlimmerHMM_glimmerT_40280-T1
Valid prediction for snap_scaffold_16-snap.2776-T1
Valid prediction for GeneMark_model.69345_t
Valid prediction for Augustus_model.g27037.t1
Valid prediction for GeneMark_model.69264_t
Valid prediction for Augustus_model.g27035.t1
Valid prediction for snap_scaffold_16-snap.2773-T1
Valid prediction for GeneMark_model.69308_t
Valid prediction for snap_scaffold_16-snap.2785-T1
Valid prediction for GeneMark_model.69336_t
Valid prediction for snap_scaffold_16-snap.2789-T1
Valid prediction for snap_scaffold_16-snap.2763-T1
Valid prediction for snap_scaffold_16-snap.2753-T1
Valid prediction for snap_scaffold_16-snap.2758-T1
Valid prediction for Augustus_model.g27027.t1
Valid prediction for snap_scaffold_16-snap.2728-T1
Valid prediction for GeneMark_model.69328_t
Valid prediction for GlimmerHMM_glimmerT_40311-T1
Valid prediction for GeneMark_model.69350_t
Valid prediction for snap_scaffold_16-snap.2762-T1
Valid prediction for GeneMark_model.69364_t
Valid prediction for GlimmerHMM_glimmerT_40290-T1
Valid prediction for GeneMark_model.69355_t
Valid prediction for GeneMark_model.69334_t
Valid prediction for GeneMark_model.69270_t
Valid prediction for snap_scaffold_16-snap.2770-T1
Valid prediction for snap_scaffold_16-snap.2757-T1
Valid prediction for GeneMark_model.69375_t
Valid prediction for snap_scaffold_16-snap.2760-T1
Valid prediction for GeneMark_model.69377_t
Valid prediction for snap_scaffold_16-snap.2781-T1
Valid prediction for GeneMark_model.69292_t
Valid prediction for GlimmerHMM_glimmerT_40291-T1
Valid prediction for Augustus_model.g27030.t1
Valid prediction for snap_scaffold_16-snap.2747-T1
Valid prediction for GeneMark_model.69371_t
Valid prediction for GlimmerHMM_glimmerT_40301-T1
Valid prediction for GlimmerHMM_glimmerT_40289-T1
Valid prediction for snap_scaffold_16-snap.2765-T1
Valid prediction for GeneMark_model.69310_t
Valid prediction for GlimmerHMM_glimmerT_40303-T1
Valid prediction for GeneMark_model.69358_t
Valid prediction for Augustus_model.g27028.t1
Valid prediction for snap_scaffold_16-snap.2733-T1
Valid prediction for snap_scaffold_16-snap.2731-T1
Valid prediction for GeneMark_model.69333_t
Valid prediction for GlimmerHMM_glimmerT_40292-T1
Valid prediction for snap_scaffold_16-snap.2774-T1
Valid prediction for GeneMark_model.69299_t
Valid prediction for GeneMark_model.69287_t
Valid prediction for GeneMark_model.69273_t
Valid prediction for snap_scaffold_16-snap.2772-T1
Valid prediction for GeneMark_model.69276_t
Valid prediction for GeneMark_model.69260_t
Valid prediction for GeneMark_model.69290_t
Valid prediction for GeneMark_model.69284_t
Valid prediction for snap_scaffold_16-snap.2735-T1
Valid prediction for GeneMark_model.69296_t
Valid prediction for snap_scaffold_16-snap.2730-T1
Valid prediction for GeneMark_model.69324_t
Valid prediction for GlimmerHMM_glimmerT_40309-T1
Valid prediction for GeneMark_model.69303_t
Valid prediction for GlimmerHMM_glimmerT_40284-T1
Valid prediction for snap_scaffold_16-snap.2737-T1
Valid prediction for snap_scaffold_16-snap.2755-T1
Valid prediction for GeneMark_model.69301_t
Valid prediction for GeneMark_model.69341_t
Valid prediction for GlimmerHMM_glimmerT_40300-T1
Valid prediction for GeneMark_model.69338_t
Valid prediction for snap_scaffold_16-snap.2791-T1
Valid prediction for GeneMark_model.69257_t
Valid prediction for GeneMark_model.69362_t
Valid prediction for Augustus_model.g27024.t1
Valid prediction for GeneMark_model.69268_t
Valid prediction for Augustus_model.g27025.t1
Valid prediction for GeneMark_model.69330_t
Valid prediction for GlimmerHMM_glimmerT_40296-T1
Valid prediction for GeneMark_model.69349_t
Valid prediction for GeneMark_model.69262_t
Valid prediction for GeneMark_model.69326_t
Valid prediction for GeneMark_model.69280_t
Valid prediction for snap_scaffold_16-snap.2782-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.69312_t
Valid prediction for GeneMark_model.69322_t
Valid prediction for GlimmerHMM_glimmerT_40287-T1
Valid prediction for GeneMark_model.69347_t
Valid prediction for GlimmerHMM_glimmerT_40281-T1
Valid prediction for snap_scaffold_16-snap.2788-T1
Valid prediction for GeneMark_model.69320_t
Valid prediction for snap_scaffold_16-snap.2741-T1
Valid prediction for snap_scaffold_16-snap.2790-T1
Valid prediction for snap_scaffold_16-snap.2761-T1
Valid prediction for snap_scaffold_16-snap.2764-T1
Valid prediction for GeneMark_model.69353_t
Valid prediction for snap_scaffold_16-snap.2767-T1
Valid prediction for GeneMark_model.69304_t
Valid prediction for GeneMark_model.69373_t
Valid prediction for snap_scaffold_16-snap.2759-T1
Valid prediction for snap_scaffold_16-snap.2783-T1
Valid prediction for GeneMark_model.69306_t
Couldn't classify 280797, 280977
Sorry, prediction pasa_asmbl_16618.p1 fails validation.
(AAC)	 AG	280797-280977	GT	AGG
(AGA)	 AG	283608-283775	GT	AGG
(GTA)	 AG	283901-283999	GT	CTG
(ATG)	 AG	284106-284163	GT	AAG
(GTT)	 AG	284677-284851	GT	AGG
(GTG)	 AG	284976-285094	GT	ATG
(GTT)	 AG	285500-285598	GT	TGG
(GGC)	 AG	286349-286468	GT	GGG
(GGC)	 AG	286598-286702	GT	AGG
(GCC)	 AG	287461-287629	GT	AGG
(AAC)	 AG	287917-288112	GT	AGG
(AGA)	 AG	288655-288824	GT	AGG
(GTG)	 AG	289118-289249	GT	TGG
(CAT)	 AG	289380-289487	GT	AGG
(GCC)	 AG	291175-291344	GT	CCG
(AGA)	 AG	292284-292298	GT	CTG
(GAA)	 AG	293381-293514	GT	CTG
(ACA)	 AG	293668-293759	AA	AGA
add_exon() Sorry, pasa_asmbl_16618.p1 284106-284163-initial-1 is invalid.
-recovered pasa_asmbl_16618.p1, initial, 284106, 284163
add_exon() Sorry, pasa_asmbl_16618.p1 287917-288112-terminal-3 is invalid.
-recovered pasa_asmbl_16618.p1, terminal, 287917, 288112
-recovered pasa_asmbl_16618.p1, terminal, 293668, 293759
-recovered pasa_asmbl_16618.p1, internal, 280797, 280977
-recovered pasa_asmbl_16618.p1, internal, 283608, 283775
-recovered pasa_asmbl_16618.p1, internal, 283901, 283999
-recovered pasa_asmbl_16618.p1, internal, 284106, 284163
-recovered pasa_asmbl_16618.p1, internal, 284677, 284851
-recovered pasa_asmbl_16618.p1, internal, 284976, 285094
-recovered pasa_asmbl_16618.p1, internal, 285500, 285598
-recovered pasa_asmbl_16618.p1, internal, 286349, 286468
-recovered pasa_asmbl_16618.p1, internal, 286598, 286702
-recovered pasa_asmbl_16618.p1, internal, 287461, 287629
-recovered pasa_asmbl_16618.p1, internal, 287917, 288112
-recovered pasa_asmbl_16618.p1, internal, 288655, 288824
-recovered pasa_asmbl_16618.p1, internal, 289118, 289249
-recovered pasa_asmbl_16618.p1, internal, 289380, 289487
-recovered pasa_asmbl_16618.p1, internal, 291175, 291344
-recovered pasa_asmbl_16618.p1, internal, 292284, 292298
-recovered pasa_asmbl_16618.p1, internal, 293381, 293514
Valid prediction for snap_scaffold_16-snap.2778-T1
Valid prediction for GeneMark_model.69316_t
Valid prediction for GeneMark_model.69323_t
Valid prediction for GeneMark_model.69369_t
Valid prediction for GeneMark_model.69357_t
Valid prediction for GlimmerHMM_glimmerT_40304-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19044, rend_intergenic: 4393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40346, rend_intergenic: 34750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48255, rend_intergenic: 45697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54976, rend_intergenic: 49977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67705, rend_intergenic: 55159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82164, rend_intergenic: 69058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86526, rend_intergenic: 82414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106468, rend_intergenic: 105223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108792, rend_intergenic: 106930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169401, rend_intergenic: 110196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170434, rend_intergenic: 169453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188311, rend_intergenic: 170503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193849, rend_intergenic: 191379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230733, rend_intergenic: 198597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238734, rend_intergenic: 232610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 252893, rend_intergenic: 248020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 266747, rend_intergenic: 253002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283376, rend_intergenic: 266912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 296859, rend_intergenic: 283700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 318484, rend_intergenic: 304926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 340557, rend_intergenic: 321918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 342823
-exon list size: 1693


building trellis

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16.6    
16.7    
16.8    
16.8    
16.9    
16.9    
17.0    
17.1    
17.1    
17.2    
17.2    
17.3    
17.3    
17.4    
17.5    
17.5    
17.6    
17.6    
17.7    
17.8    
17.8    
17.9    
17.9    
18.0    
18.1    
18.1    
18.2    
18.2    
18.3    
18.3    
18.4    
18.5    
18.5    
18.6    
18.6    
18.7    
18.8    
18.8    
18.9    
18.9    
19.0    
19.1    
19.1    
19.2    
19.2    
19.3    
19.4    
19.4    
19.5    
19.5    
19.6    
19.6    
19.7    
19.8    
19.8    
19.9    
19.9    
20.0    
20.1    
20.1    
20.2    
20.2    
20.3    
20.4    
20.4    
20.5    
20.5    
20.6    
20.6    
20.7    
20.8    
20.8    
20.9    
20.9    
21.0    
21.1    
21.1    
21.2    
21.2    
21.3    
21.4    
21.4    
21.5    
21.5    
21.6    
21.7    
21.7    
21.8    
21.8    
21.9    
21.9    
22.0    
22.1    
22.1    
22.2    
22.2    
22.3    
22.4    
22.4    
22.5    
22.5    
22.6    
22.7    
22.7    
22.8    
22.8    
22.9    
22.9    
23.0    
23.1    
23.1    
23.2    
23.2    
23.3    
23.4    
23.4    
23.5    
23.5    
23.6    
23.7    
23.7    
23.8    
23.8    
23.9    
24.0    
24.0    
24.1    
24.1    
24.2    
24.2    
24.3    
24.4    
24.4    
24.5    
24.5    
24.6    
24.7    
24.7    
24.8    
24.8    
24.9    
25.0    
25.0    
25.1    
25.1    
25.2    
25.3    
25.3    
25.4    
25.4    
25.5    
25.5    
25.6    
25.7    
25.7    
25.8    
25.8    
25.9    
26.0    
26.0    
26.1    
26.1    
26.2    
26.3    
26.3    
26.4    
26.4    
26.5    
26.5    
26.6    
26.7    
26.7    
26.8    
26.8    
26.9    
27.0    
27.0    
27.1    
27.1    
27.2    
27.3    
27.3    
27.4    
27.4    
27.5    
27.6    
27.6    
27.7    
27.7    
27.8    
27.8    
27.9    
28.0    
28.0    
28.1    
28.1    
28.2    
28.3    
28.3    
28.4    
28.4    
28.5    
28.6    
28.6    
28.7    
28.7    
28.8    
28.8    
28.9    
29.0    
29.0    
29.1    
29.1    
29.2    
29.3    
29.3    
29.4    
29.4    
29.5    
29.6    
29.6    
29.7    
29.7    
29.8    
29.9    
29.9    
30.0    
30.0    
30.1    
30.1    
30.2    
30.3    
30.3    
30.4    
30.4    
30.5    
30.6    
30.6    
30.7    
30.7    
30.8    
30.9    
30.9    
31.0    
31.0    
31.1    
31.2    
31.2    
31.3    
31.3    
31.4    
31.4    
31.5    
31.6    
31.6    
31.7    
31.7    
31.8    
31.9    
31.9    
32.0    
32.0    
32.1    
32.2    
32.2    
32.3    
32.3    
32.4    
32.4    
32.5    
32.6    
32.6    
32.7    
32.7    
32.8    
32.9    
32.9    
33.0    
33.0    
33.1    
33.2    
33.2    
33.3    
33.3    
33.4    
33.5    
33.5    
33.6    
33.6    
33.7    
33.7    
33.8    
33.9    
33.9    
34.0    
34.0    
34.1    
34.2    
34.2    
34.3    
34.3    
34.4    
34.5    
34.5    
34.6    
34.6    
34.7    
34.7    
34.8    
34.9    
34.9    
35.0    
35.0    
35.1    
35.2    
35.2    
35.3    
35.3    
35.4    
35.5    
35.5    
35.6    
35.6    
35.7    
35.8    
35.8    
35.9    
35.9    
36.0    
36.0    
36.1    
36.2    
36.2    
36.3    
36.3    
36.4    
36.5    
36.5    
36.6    
36.6    
36.7    
36.8    
36.8    
36.9    
36.9    
37.0    
37.1    
37.1    
37.2    
37.2    
37.3    
37.3    
37.4    
37.5    
37.5    
37.6    
37.6    
37.7    
37.8    
37.8    
37.9    
37.9    
38.0    
38.1    
38.1    
38.2    
38.2    
38.3    
38.3    
38.4    
38.5    
38.5    
38.6    
38.6    
38.7    
38.8    
38.8    
38.9    
38.9    
39.0    
39.1    
39.1    
39.2    
39.2    
39.3    
39.4    
39.4    
39.5    
39.5    
39.6    
39.6    
39.7    
39.8    
39.8    
39.9    
39.9    
40.0    
40.1    
40.1    
40.2    
40.2    
40.3    
40.4    
40.4    
40.5    
40.5    
40.6    
40.6    
40.7    
40.8    
40.8    
40.9    
40.9    
41.0    
41.1    
41.1    
41.2    
41.2    
41.3    
41.4    
41.4    
41.5    
41.5    
41.6    
41.7    
41.7    
41.8    
41.8    
41.9    
41.9    
42.0    
42.1    
42.1    
42.2    
42.2    
42.3    
42.4    
42.4    
42.5    
42.5    
42.6    
42.7    
42.7    
42.8    
42.8    
42.9    
42.9    
43.0    
43.1    
43.1    
43.2    
43.2    
43.3    
43.4    
43.4    
43.5    
43.5    
43.6    
43.7    
43.7    
43.8    
43.8    
43.9    
44.0    
44.0    
44.1    
44.1    
44.2    
44.2    
44.3    
44.4    
44.4    
44.5    
44.5    
44.6    
44.7    
44.7    
44.8    
44.8    
44.9    
45.0    
45.0    
45.1    
45.1    
45.2    
45.3    
45.3    
45.4    
45.4    
45.5    
45.5    
45.6    
45.7    
45.7    
45.8    
45.8    
45.9    
46.0    
46.0    
46.1    
46.1    
46.2    
46.3    
46.3    
46.4    
46.4    
46.5    
46.5    
46.6    
46.7    
46.7    
46.8    
46.8    
46.9    
47.0    
47.0    
47.1    
47.1    
47.2    
47.3    
47.3    
47.4    
47.4    
47.5    
47.6    
47.6    
47.7    
47.7    
47.8    
47.8    
47.9    
48.0    
48.0    
48.1    
48.1    
48.2    
48.3    
48.3    
48.4    
48.4    
48.5    
48.6    
48.6    
48.7    
48.7    
48.8    
48.8    
48.9    
49.0    
49.0    
49.1    
49.1    
49.2    
49.3    
49.3    
49.4    
49.4    
49.5    
49.6    
49.6    
49.7    
49.7    
49.8    
49.9    
49.9    
50.0    
50.0    
50.1    
50.1    
50.2    
50.3    
50.3    
50.4    
50.4    
50.5    
50.6    
50.6    
50.7    
50.7    
50.8    
50.9    
50.9    
51.0    
51.0    
51.1    
51.2    
51.2    
51.3    
51.3    
51.4    
51.4    
51.5    
51.6    
51.6    
51.7    
51.7    
51.8    
51.9    
51.9    
52.0    
52.0    
52.1    
52.2    
52.2    
52.3    
52.3    
52.4    
52.4    
52.5    
52.6    
52.6    
52.7    
52.7    
52.8    
52.9    
52.9    
53.0    
53.0    
53.1    
53.2    
53.2    
53.3    
53.3    
53.4    
53.5    
53.5    
53.6    
53.6    
53.7    
53.7    
53.8    
53.9    
53.9    
54.0    
54.0    
54.1    
54.2    
54.2    
54.3    
54.3    
54.4    
54.5    
54.5    
54.6    
54.6    
54.7    
54.7    
54.8    
54.9    
54.9    
55.0    
55.0    
55.1    
55.2    
55.2    
55.3    
55.3    
55.4    
55.5    
55.5    
55.6    
55.6    
55.7    
55.8    
55.8    
55.9    
55.9    
56.0    
56.0    
56.1    
56.2    
56.2    
56.3    
56.3    
56.4    
56.5    
56.5    
56.6    
56.6    
56.7    
56.8    
56.8    
56.9    
56.9    
57.0    
57.1    
57.1    
57.2    
57.2    
57.3    
57.3    
57.4    
57.5    
57.5    
57.6    
57.6    
57.7    
57.8    
57.8    
57.9    
57.9    
58.0    
58.1    
58.1    
58.2    
58.2    
58.3    
58.3    
58.4    
58.5    
58.5    
58.6    
58.6    
58.7    
58.8    
58.8    
58.9    
58.9    
59.0    
59.1    
59.1    
59.2    
59.2    
59.3    
59.4    
59.4    
59.5    
59.5    
59.6    
59.6    
59.7    
59.8    
59.8    
59.9    
59.9    
60.0    
60.1    
60.1    
60.2    
60.2    
60.3    
60.4    
60.4    
60.5    
60.5    
60.6    
60.6    
60.7    
60.8    
60.8    
60.9    
60.9    
61.0    
61.1    
61.1    
61.2    
61.2    
61.3    
61.4    
61.4    
61.5    
61.5    
61.6    
61.7    
61.7    
61.8    
61.8    
61.9    
61.9    
62.0    
62.1    
62.1    
62.2    
62.2    
62.3    
62.4    
62.4    
62.5    
62.5    
62.6    
62.7    
62.7    
62.8    
62.8    
62.9    
62.9    
63.0    
63.1    
63.1    
63.2    
63.2    
63.3    
63.4    
63.4    
63.5    
63.5    
63.6    
63.7    
63.7    
63.8    
63.8    
63.9    
64.0    
64.0    
64.1    
64.1    
64.2    
64.2    
64.3    
64.4    
64.4    
64.5    
64.5    
64.6    
64.7    
64.7    
64.8    
64.8    
64.9    
65.0    
65.0    
65.1    
65.1    
65.2    
65.3    
65.3    
65.4    
65.4    
65.5    
65.5    
65.6    
65.7    
65.7    
65.8    
65.8    
65.9    
66.0    
66.0    
66.1    
66.1    
66.2    
66.3    
66.3    
66.4    
66.4    
66.5    
66.5    
66.6    
66.7    
66.7    
66.8    
66.8    
66.9    
67.0    
67.0    
67.1    
67.1    
67.2    
67.3    
67.3    
67.4    
67.4    
67.5    
67.6    
67.6    
67.7    
67.7    
67.8    
67.8    
67.9    
68.0    
68.0    
68.1    
68.1    
68.2    
68.3    
68.3    
68.4    
68.4    
68.5    
68.6    
68.6    
68.7    
68.7    
68.8    
68.8    
68.9    
69.0    
69.0    
69.1    
69.1    
69.2    
69.3    
69.3    
69.4    
69.4    
69.5    
69.6    
69.6    
69.7    
69.7    
69.8    
69.9    
69.9    
70.0    
70.0    
70.1    
70.1    
70.2    
70.3    
70.3    
70.4    
70.4    
70.5    
70.6    
70.6    
70.7    
70.7    
70.8    
70.9    
70.9    
71.0    
71.0    
71.1    
71.2    
71.2    
71.3    
71.3    
71.4    
71.4    
71.5    
71.6    
71.6    
71.7    
71.7    
71.8    
71.9    
71.9    
72.0    
72.0    
72.1    
72.2    
72.2    
72.3    
72.3    
72.4    
72.4    
72.5    
72.6    
72.6    
72.7    
72.7    
72.8    
72.9    
72.9    
73.0    
73.0    
73.1    
73.2    
73.2    
73.3    
73.3    
73.4    
73.5    
73.5    
73.6    
73.6    
73.7    
73.7    
73.8    
73.9    
73.9    
74.0    
74.0    
74.1    
74.2    
74.2    
74.3    
74.3    
74.4    
74.5    
74.5    
74.6    
74.6    
74.7    
74.7    
74.8    
74.9    
74.9    
75.0    
75.0    
75.1    
75.2    
75.2    
75.3    
75.3    
75.4    
75.5    
75.5    
75.6    
75.6    
75.7    
75.8    
75.8    
75.9    
75.9    
76.0    
76.0    
76.1    
76.2    
76.2    
76.3    
76.3    
76.4    
76.5    
76.5    
76.6    
76.6    
76.7    
76.8    
76.8    
76.9    
76.9    
77.0    
77.1    
77.1    
77.2    
77.2    
77.3    
77.3    
77.4    
77.5    
77.5    
77.6    
77.6    
77.7    
77.8    
77.8    
77.9    
77.9    
78.0    
78.1    
78.1    
78.2    
78.2    
78.3    
78.3    
78.4    
78.5    
78.5    
78.6    
78.6    
78.7    
78.8    
78.8    
78.9    
78.9    
79.0    
79.1    
79.1    
79.2    
79.2    
79.3    
79.4    
79.4    
79.5    
79.5    
79.6    
79.6    
79.7    
79.8    
79.8    
79.9    
79.9    
80.0    
80.1    
80.1    
80.2    
80.2    
80.3    
80.4    
80.4    
80.5    
80.5    
80.6    
80.6    
80.7    
80.8    
80.8    
80.9    
80.9    
81.0    
81.1    
81.1    
81.2    
81.2    
81.3    
81.4    
81.4    
81.5    
81.5    
81.6    
81.7    
81.7    
81.8    
81.8    
81.9    
81.9    
82.0    
82.1    
82.1    
82.2    
82.2    
82.3    
82.4    
82.4    
82.5    
82.5    
82.6    
82.7    
82.7    
82.8    
82.8    
82.9    
82.9    
83.0    
83.1    
83.1    
83.2    
83.2    
83.3    
83.4    
83.4    
83.5    
83.5    
83.6    
83.7    
83.7    
83.8    
83.8    
83.9    
84.0    
84.0    
84.1    
84.1    
84.2    
84.2    
84.3    
84.4    
84.4    
84.5    
84.5    
84.6    
84.7    
84.7    
84.8    
84.8    
84.9    
85.0    
85.0    
85.1    
85.1    
85.2    
85.3    
85.3    
85.4    
85.4    
85.5    
85.5    
85.6    
85.7    
85.7    
85.8    
85.8    
85.9    
86.0    
86.0    
86.1    
86.1    
86.2    
86.3    
86.3    
86.4    
86.4    
86.5    
86.5    
86.6    
86.7    
86.7    
86.8    
86.8    
86.9    
87.0    
87.0    
87.1    
87.1    
87.2    
87.3    
87.3    
87.4    
87.4    
87.5    
87.6    
87.6    
87.7    
87.7    
87.8    
87.8    
87.9    
88.0    
88.0    
88.1    
88.1    
88.2    
88.3    
88.3    
88.4    
88.4    
88.5    
88.6    
88.6    
88.7    
88.7    
88.8    
88.8    
88.9    
89.0    
89.0    
89.1    
89.1    
89.2    
89.3    
89.3    
89.4    
89.4    
89.5    
89.6    
89.6    
89.7    
89.7    
89.8    
89.9    
89.9    
90.0    
90.0    
90.1    
90.1    
90.2    
90.3    
90.3    
90.4    
90.4    
90.5    
90.6    
90.6    
90.7    
90.7    
90.8    
90.9    
90.9    
91.0    
91.0    
91.1    
91.2    
91.2    
91.3    
91.3    
91.4    
91.4    
91.5    
91.6    
91.6    
91.7    
91.7    
91.8    
91.9    
91.9    
92.0    
92.0    
92.1    
92.2    
92.2    
92.3    
92.3    
92.4    
92.4    
92.5    
92.6    
92.6    
92.7    
92.7    
92.8    
92.9    
92.9    
93.0    
93.0    
93.1    
93.2    
93.2    
93.3    
93.3    
93.4    
93.5    
93.5    
93.6    
93.6    
93.7    
93.7    
93.8    
93.9    
93.9    
94.0    
94.0    
94.1    
94.2    
94.2    
94.3    
94.3    
94.4    
94.5    
94.5    
94.6    
94.6    
94.7    
94.7    
94.8    
94.9    
94.9    
95.0    
95.0    
95.1    
95.2    
95.2    
95.3    
95.3    
95.4    
95.5    
95.5    
95.6    
95.6    
95.7    
95.8    
95.8    
95.9    
95.9    
96.0    
96.0    
96.1    
96.2    
96.2    
96.3    
96.3    
96.4    
96.5    
96.5    
96.6    
96.6    
96.7    
96.8    
96.8    
96.9    
96.9    
97.0    
97.1    
97.1    
97.2    
97.2    
97.3    
97.3    
97.4    
97.5    
97.5    
97.6    
97.6    
97.7    
97.8    
97.8    
97.9    
97.9    
98.0    
98.1    
98.1    
98.2    
98.2    
98.3    
98.3    
98.4    
98.5    
98.5    
98.6    
98.6    
98.7    
98.8    
98.8    
98.9    
98.9    
99.0    
99.1    
99.1    
99.2    
99.2    
99.3    
99.4    
99.4    
99.5    
99.5    
99.6    
99.6    
99.7    
99.8    
99.8    
99.9    
99.9    
-found 58 predictions from path traversal
Error with prediction: snap lend_intergenic: 19044, rend_intergenic: 4393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40346, rend_intergenic: 34750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48255, rend_intergenic: 45697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54976, rend_intergenic: 49977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67705, rend_intergenic: 55159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82164, rend_intergenic: 69058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86526, rend_intergenic: 82414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106468, rend_intergenic: 105223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108792, rend_intergenic: 106930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169401, rend_intergenic: 110196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170434, rend_intergenic: 169453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188311, rend_intergenic: 170503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193849, rend_intergenic: 191379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230733, rend_intergenic: 198597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238734, rend_intergenic: 232610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 252893, rend_intergenic: 248020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 266747, rend_intergenic: 253002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283376, rend_intergenic: 266912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 296859, rend_intergenic: 283700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 318484, rend_intergenic: 304926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 340557, rend_intergenic: 321918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13425
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11556
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support