-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_13962422-14142893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.69220_t
Valid prediction for snap_scaffold_16-snap.2702-T1
Valid prediction for GeneMark_model.69217_t
Valid prediction for GlimmerHMM_glimmerT_40269-T1
Valid prediction for GeneMark_model.69214_t
Valid prediction for GeneMark_model.69212_t
Valid prediction for CodingQuarry_transcript_20087-T1
Valid prediction for GeneMark_model.69241_t
Valid prediction for GeneMark_model.69251_t
Valid prediction for snap_scaffold_16-snap.2722-T1
Valid prediction for snap_scaffold_16-snap.2712-T1
Valid prediction for GlimmerHMM_glimmerT_40274-T1
Valid prediction for snap_scaffold_16-snap.2704-T1
Valid prediction for GeneMark_model.69218_t
Valid prediction for snap_scaffold_16-snap.2708-T1
Valid prediction for GlimmerHMM_glimmerT_40262-T1
Valid prediction for GeneMark_model.69237_t
Valid prediction for GeneMark_model.69233_t
Valid prediction for GeneMark_model.69235_t
Valid prediction for GeneMark_model.69221_t
Valid prediction for snap_scaffold_16-snap.2720-T1
Valid prediction for snap_scaffold_16-snap.2714-T1
Valid prediction for snap_scaffold_16-snap.2703-T1
Valid prediction for GeneMark_model.69228_t
Valid prediction for snap_scaffold_16-snap.2724-T1
Valid prediction for snap_scaffold_16-snap.2711-T1
Valid prediction for GeneMark_model.69255_t
Valid prediction for Augustus_model.g27015.t1
Valid prediction for GlimmerHMM_glimmerT_40270-T1
Valid prediction for GeneMark_model.69243_t
Valid prediction for GlimmerHMM_glimmerT_40267-T1
Valid prediction for GeneMark_model.69226_t
Valid prediction for GlimmerHMM_glimmerT_40277-T1
Valid prediction for GeneMark_model.69246_t
Valid prediction for snap_scaffold_16-snap.2725-T1
Valid prediction for pasa_asmbl_17472.p1
Valid prediction for Augustus_model.g27018.t1
Valid prediction for GeneMark_model.69230_t
Valid prediction for GlimmerHMM_glimmerT_40272-T1
Valid prediction for GlimmerHMM_glimmerT_40265-T1
Valid prediction for GeneMark_model.69224_t
Valid prediction for snap_scaffold_16-snap.2715-T1
Valid prediction for CodingQuarry_transcript_20086-T1
Valid prediction for Augustus_model.g27019.t1
Valid prediction for GeneMark_model.69223_t
Valid prediction for GeneMark_model.69249_t
Valid prediction for snap_scaffold_16-snap.2705-T1
Couldn't classify 79580, 79657
Sorry, prediction Augustus_model.g27016.t1 fails validation.
(GAA)	 AG	79580-79657	GT	CTG
(ACT)	 AG	79759-79901	GT	AGG
(GAT)	 AG	80992-81112	GT	AGG
(TTC)	 AG	81550-81667	GT	CTG
(GTA)	 AG	81952-82144	GT	AGG
(GAG)	 AG	82556-82612	GT	AGG
(GTG)	 AG	82905-83183	GT	TGG
(CTG)	 AG	85756-85866	GT	ACG
(GTG)	 AG	85951-86080	GT	TCG
(GTG)	 AG	87243-87438	GT	AGG
(CTG)	 AG	87781-87864	GT	AGG
(CCC)	 AG	88170-88377	GT	AGG
(GTT)	 AG	89072-89178	GT	AGG
(TAC)	 AG	89571-89670	GT	AGG
(GTG)	 AG	90674-90802	GT	AGG
(CTC)	 AG	91163-91336	GT	TGG
(TAC)	 AG	91739-92127	GT	AGG
(TAG)	 AG	92783-92871	GT	TGG
(ATA)	 AG	93136-93206	GT	AGG
(GTG)	 AG	93328-93448	GT	GGG
(AAG)	 AG	94269-94348	GT	AGG
(GGG)	 AG	94675-94789	GT	CAG
(GCT)	 AG	94870-94953	GT	AGG
(CTG)	 AG	95298-95418	GT	AGG
(GGT)	 AG	95495-95729	GT	AGG
(ATG)	 AG	95998-96102	GT	AGG
(ATC)	 AG	98394-98600	GT	TGG
(GTC)	 AG	98877-99038	GT	GGG
(TCC)	 AG	99370-99391	GT	AGG
(GGC)	 AG	99609-99937	CA	GAC
-recovered Augustus_model.g27016.t1, initial, 95998, 96102
-recovered Augustus_model.g27016.t1, terminal, 99609, 99937
-recovered Augustus_model.g27016.t1, internal, 79580, 79657
-recovered Augustus_model.g27016.t1, internal, 79759, 79901
-recovered Augustus_model.g27016.t1, internal, 80992, 81112
-recovered Augustus_model.g27016.t1, internal, 81550, 81667
-recovered Augustus_model.g27016.t1, internal, 81952, 82144
-recovered Augustus_model.g27016.t1, internal, 82556, 82612
-recovered Augustus_model.g27016.t1, internal, 82905, 83183
-recovered Augustus_model.g27016.t1, internal, 85756, 85866
-recovered Augustus_model.g27016.t1, internal, 85951, 86080
-recovered Augustus_model.g27016.t1, internal, 87243, 87438
-recovered Augustus_model.g27016.t1, internal, 87781, 87864
-recovered Augustus_model.g27016.t1, internal, 88170, 88377
-recovered Augustus_model.g27016.t1, internal, 89072, 89178
-recovered Augustus_model.g27016.t1, internal, 89571, 89670
-recovered Augustus_model.g27016.t1, internal, 90674, 90802
-recovered Augustus_model.g27016.t1, internal, 91163, 91336
-recovered Augustus_model.g27016.t1, internal, 91739, 92127
-recovered Augustus_model.g27016.t1, internal, 92783, 92871
-recovered Augustus_model.g27016.t1, internal, 93136, 93206
-recovered Augustus_model.g27016.t1, internal, 93328, 93448
-recovered Augustus_model.g27016.t1, internal, 94269, 94348
-recovered Augustus_model.g27016.t1, internal, 94675, 94789
-recovered Augustus_model.g27016.t1, internal, 94870, 94953
-recovered Augustus_model.g27016.t1, internal, 95298, 95418
-recovered Augustus_model.g27016.t1, internal, 95495, 95729
-recovered Augustus_model.g27016.t1, internal, 95998, 96102
-recovered Augustus_model.g27016.t1, internal, 98394, 98600
-recovered Augustus_model.g27016.t1, internal, 98877, 99038
-recovered Augustus_model.g27016.t1, internal, 99370, 99391
Valid prediction for GlimmerHMM_glimmerT_40264-T1
Valid prediction for HiQ_model.g27017.t1
Valid prediction for GeneMark_model.69253_t
Valid prediction for snap_scaffold_16-snap.2707-T1
Valid prediction for GlimmerHMM_glimmerT_40273-T1
Valid prediction for snap_scaffold_16-snap.2718-T1
Valid prediction for GlimmerHMM_glimmerT_40271-T1
Valid prediction for GeneMark_model.69215_t
Valid prediction for snap_scaffold_16-snap.2710-T1
Valid prediction for GeneMark_model.69210_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2701-T1
Valid prediction for snap_scaffold_16-snap.2721-T1
Valid prediction for GeneMark_model.69213_t
Couldn't classify 153224, 153640
Sorry, prediction pasa_asmbl_16605.p1 fails validation.
(GAC)	 GG	153224-153640	CT	CCC
Valid prediction for GeneMark_model.69242_t
Valid prediction for snap_scaffold_16-snap.2723-T1
Valid prediction for snap_scaffold_16-snap.2719-T1
Valid prediction for GeneMark_model.69254_t
Valid prediction for GeneMark_model.69211_t
Couldn't classify 27601, 27675
Couldn't classify 30612, 30662
Sorry, prediction pasa_asmbl_16614.p1 fails validation.
(GGT)	 AG	27601-27675	GT	ACG
(GCA)	 AG	28448-28540	GT	TGG
(CCT)	 AG	28911-29028	GT	AGG
(GAC)	 AG	29879-29919	GT	TGG
(CAG)	 AG	30612-30662	CC	GGC
-recovered pasa_asmbl_16614.p1, internal, 27601, 27675
-recovered pasa_asmbl_16614.p1, internal, 28448, 28540
-recovered pasa_asmbl_16614.p1, internal, 28911, 29028
-recovered pasa_asmbl_16614.p1, internal, 29879, 29919
Valid prediction for GeneMark_model.69248_t
Valid prediction for CodingQuarry_transcript_20088-T1
Valid prediction for GeneMark_model.69225_t
Valid prediction for GeneMark_model.69252_t
Valid prediction for pasa_asmbl_16612.p1
Valid prediction for snap_scaffold_16-snap.2706-T1
Valid prediction for CodingQuarry_transcript_20089-T1
Valid prediction for GlimmerHMM_glimmerT_40261-T1
Couldn't classify 162045, 162163
Sorry, prediction pasa_asmbl_16602.p1 fails validation.
(GCC)	 GG	162045-162163	GT	AGG
(CAC)	 AG	162819-162897	GT	TGG
(GAT)	 AG	163225-163464	GA	GAG
-recovered pasa_asmbl_16602.p1, terminal, 163225, 163464
-recovered pasa_asmbl_16602.p1, internal, 162819, 162897
Valid prediction for Augustus_model.g27023.t1
Valid prediction for GeneMark_model.69231_t
Valid prediction for Augustus_model.g27022.t1
Valid prediction for snap_scaffold_16-snap.2713-T1
Valid prediction for snap_scaffold_16-snap.2709-T1
Valid prediction for GeneMark_model.69245_t
Valid prediction for GeneMark_model.69244_t
Valid prediction for snap_scaffold_16-snap.2726-T1
Valid prediction for GeneMark_model.69247_t
Valid prediction for GlimmerHMM_glimmerT_40266-T1
Valid prediction for Augustus_model.g27013.t1
Valid prediction for Augustus_model.g27021.t1
Valid prediction for GeneMark_model.69238_t
Valid prediction for Augustus_model.g27014.t1
Valid prediction for GlimmerHMM_glimmerT_40263-T1
Valid prediction for Augustus_model.g27012.t1
Valid prediction for pasa_asmbl_16610.p1
Valid prediction for GeneMark_model.69250_t
Couldn't classify 140331, 140494
Sorry, prediction pasa_asmbl_16607.p1 fails validation.
(ATG)	 AG	134510-134672	GT	AGG
(CTT)	 AG	135927-136006	GT	TGG
(AGG)	 AG	137892-137946	GT	CGG
(GGT)	 AG	140331-140494	AC	CCA
-recovered pasa_asmbl_16607.p1, initial, 134510, 134672
-recovered pasa_asmbl_16607.p1, internal, 134510, 134672
-recovered pasa_asmbl_16607.p1, internal, 135927, 136006
-recovered pasa_asmbl_16607.p1, internal, 137892, 137946
Valid prediction for GeneMark_model.69256_t
Valid prediction for GeneMark_model.69216_t
Valid prediction for GeneMark_model.69240_t
Valid prediction for GeneMark_model.69209_t
Couldn't classify 159524, 159554
Couldn't classify 161916, 161975
Sorry, prediction pasa_asmbl_16603.p1 fails validation.
(CTT)	 CA	159524-159554	GT	AGG
(ACC)	 AG	159864-159936	GT	CGG
(CTC)	 AG	160236-160429	GT	TGG
(TGC)	 AG	160735-160881	GT	AGG
(ATG)	 AG	161499-161527	GT	AGG
(GAC)	 AG	161916-161975	TC	CCT
add_exon() Sorry, pasa_asmbl_16603.p1 161499-161527-initial-1 is invalid.
-recovered pasa_asmbl_16603.p1, initial, 161499, 161527
-recovered pasa_asmbl_16603.p1, internal, 159864, 159936
-recovered pasa_asmbl_16603.p1, internal, 160236, 160429
-recovered pasa_asmbl_16603.p1, internal, 160735, 160881
-recovered pasa_asmbl_16603.p1, internal, 161499, 161527
Valid prediction for GeneMark_model.69239_t
Valid prediction for GeneMark_model.69208_t
Valid prediction for GlimmerHMM_glimmerT_40275-T1
Valid prediction for GeneMark_model.69227_t
Valid prediction for snap_scaffold_16-snap.2700-T1
Valid prediction for GeneMark_model.69222_t
Valid prediction for Augustus_model.g27020.t1
Valid prediction for snap_scaffold_16-snap.2717-T1
Valid prediction for CodingQuarry_transcript_20085-T1
Valid prediction for snap_scaffold_16-snap.2716-T1
Valid prediction for GlimmerHMM_glimmerT_40276-T1
Valid prediction for GeneMark_model.69219_t
Valid prediction for snap_scaffold_16-snap.2727-T1
Valid prediction for GeneMark_model.69234_t
Valid prediction for GlimmerHMM_glimmerT_40268-T1
Valid prediction for GeneMark_model.69229_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 35645, rend_intergenic: 15075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37164, rend_intergenic: 36201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94985, rend_intergenic: 76961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98650, rend_intergenic: 95270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110779, rend_intergenic: 108637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117636, rend_intergenic: 111181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132989, rend_intergenic: 121058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139500, rend_intergenic: 137615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163169, rend_intergenic: 149832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176416, rend_intergenic: 163455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 180472
-exon list size: 754


building trellis

0.1    
0.3    
0.4    
0.5    
0.7    
0.8    
0.9    
1.1    
1.2    
1.3    
1.5    
1.6    
1.7    
1.9    
2.0    
2.1    
2.2    
2.4    
2.5    
2.6    
2.8    
2.9    
3.0    
3.2    
3.3    
3.4    
3.6    
3.7    
3.8    
4.0    
4.1    
4.2    
4.4    
4.5    
4.6    
4.8    
4.9    
5.0    
5.2    
5.3    
5.4    
5.6    
5.7    
5.8    
6.0    
6.1    
6.2    
6.3    
6.5    
6.6    
6.7    
6.9    
7.0    
7.1    
7.3    
7.4    
7.5    
7.7    
7.8    
7.9    
8.1    
8.2    
8.3    
8.5    
8.6    
8.7    
8.9    
9.0    
9.1    
9.3    
9.4    
9.5    
9.7    
9.8    
9.9    
10.1    
10.2    
10.3    
10.4    
10.6    
10.7    
10.8    
11.0    
11.1    
11.2    
11.4    
11.5    
11.6    
11.8    
11.9    
12.0    
12.2    
12.3    
12.4    
12.6    
12.7    
12.8    
13.0    
13.1    
13.2    
13.4    
13.5    
13.6    
13.8    
13.9    
14.0    
14.2    
14.3    
14.4    
14.6    
14.7    
14.8    
14.9    
15.1    
15.2    
15.3    
15.5    
15.6    
15.7    
15.9    
16.0    
16.1    
16.3    
16.4    
16.5    
16.7    
16.8    
16.9    
17.1    
17.2    
17.3    
17.5    
17.6    
17.7    
17.9    
18.0    
18.1    
18.3    
18.4    
18.5    
18.7    
18.8    
18.9    
19.0    
19.2    
19.3    
19.4    
19.6    
19.7    
19.8    
20.0    
20.1    
20.2    
20.4    
20.5    
20.6    
20.8    
20.9    
21.0    
21.2    
21.3    
21.4    
21.6    
21.7    
21.8    
22.0    
22.1    
22.2    
22.4    
22.5    
22.6    
22.8    
22.9    
23.0    
23.1    
23.3    
23.4    
23.5    
23.7    
23.8    
23.9    
24.1    
24.2    
24.3    
24.5    
24.6    
24.7    
24.9    
25.0    
25.1    
25.3    
25.4    
25.5    
25.7    
25.8    
25.9    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.8    
27.9    
28.0    
28.2    
28.3    
28.4    
28.6    
28.7    
28.8    
29.0    
29.1    
29.2    
29.4    
29.5    
29.6    
29.8    
29.9    
30.0    
30.2    
30.3    
30.4    
30.6    
30.7    
30.8    
31.0    
31.1    
31.2    
31.3    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.3    
32.4    
32.5    
32.7    
32.8    
32.9    
33.1    
33.2    
33.3    
33.5    
33.6    
33.7    
33.9    
34.0    
34.1    
34.3    
34.4    
34.5    
34.7    
34.8    
34.9    
35.1    
35.2    
35.3    
35.4    
35.6    
35.7    
35.8    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.1    
40.2    
40.3    
40.5    
40.6    
40.7    
40.9    
41.0    
41.1    
41.3    
41.4    
41.5    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.3    
43.4    
43.5    
43.7    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 35645, rend_intergenic: 15075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37164, rend_intergenic: 36201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94985, rend_intergenic: 76961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98650, rend_intergenic: 95270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110779, rend_intergenic: 108637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117636, rend_intergenic: 111181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132989, rend_intergenic: 121058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139500, rend_intergenic: 137615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163169, rend_intergenic: 149832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176416, rend_intergenic: 163455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support