-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_13446051-13767875

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.69124_t
Valid prediction for snap_scaffold_16-snap.2618-T1
Valid prediction for GeneMark_model.69105_t
Valid prediction for GeneMark_model.69130_t
Valid prediction for GeneMark_model.69077_t
Valid prediction for GeneMark_model.69090_t
Valid prediction for GeneMark_model.69128_t
Valid prediction for GeneMark_model.69100_t
Valid prediction for snap_scaffold_16-snap.2595-T1
Valid prediction for HiQ_model.g26993.t1
Valid prediction for GlimmerHMM_glimmerT_40231-T1
Valid prediction for snap_scaffold_16-snap.2598-T1
Valid prediction for snap_scaffold_16-snap.2648-T1
Valid prediction for snap_scaffold_16-snap.2622-T1
Valid prediction for GeneMark_model.69132_t
Valid prediction for GeneMark_model.69089_t
Valid prediction for GlimmerHMM_glimmerT_40225-T1
Valid prediction for snap_scaffold_16-snap.2620-T1
Valid prediction for GlimmerHMM_glimmerT_40227-T1
Valid prediction for GeneMark_model.69055_t
Valid prediction for GeneMark_model.69046_t
Valid prediction for snap_scaffold_16-snap.2645-T1
Valid prediction for GeneMark_model.69117_t
Valid prediction for GeneMark_model.69063_t
Valid prediction for GeneMark_model.69051_t
Valid prediction for GeneMark_model.69076_t
Valid prediction for GeneMark_model.69112_t
Valid prediction for snap_scaffold_16-snap.2634-T1
Valid prediction for GeneMark_model.69072_t
Valid prediction for GeneMark_model.69134_t
Valid prediction for GeneMark_model.69065_t
Valid prediction for GeneMark_model.69085_t
Valid prediction for snap_scaffold_16-snap.2646-T1
Valid prediction for GeneMark_model.69095_t
Valid prediction for GeneMark_model.69121_t
Valid prediction for GlimmerHMM_glimmerT_40226-T1
Valid prediction for snap_scaffold_16-snap.2601-T1
Valid prediction for GeneMark_model.69125_t
Valid prediction for GlimmerHMM_glimmerT_40213-T1
Valid prediction for snap_scaffold_16-snap.2636-T1
Valid prediction for snap_scaffold_16-snap.2651-T1
Valid prediction for snap_scaffold_16-snap.2647-T1
Valid prediction for GlimmerHMM_glimmerT_40207-T1
Valid prediction for GeneMark_model.69111_t
Valid prediction for GlimmerHMM_glimmerT_40224-T1
Valid prediction for GeneMark_model.69087_t
Valid prediction for GeneMark_model.69070_t
Couldn't classify 41782, 42219
Sorry, prediction pasa_asmbl_17552.p1 fails validation.
(TAC)	 TC	41782-42219	AC	AAA
Valid prediction for snap_scaffold_16-snap.2635-T1
Valid prediction for GeneMark_model.69042_t
Valid prediction for GeneMark_model.69092_t
Valid prediction for GeneMark_model.69108_t
Valid prediction for snap_scaffold_16-snap.2638-T1
Valid prediction for snap_scaffold_16-snap.2633-T1
Valid prediction for GeneMark_model.69067_t
Valid prediction for GlimmerHMM_glimmerT_40229-T1
Valid prediction for GlimmerHMM_glimmerT_40230-T1
Valid prediction for GeneMark_model.69040_t
Valid prediction for GeneMark_model.69043_t
Valid prediction for GeneMark_model.69068_t
Valid prediction for GeneMark_model.69053_t
Valid prediction for GeneMark_model.69079_t
Valid prediction for GeneMark_model.69098_t
Valid prediction for snap_scaffold_16-snap.2653-T1
Valid prediction for snap_scaffold_16-snap.2623-T1
Valid prediction for GeneMark_model.69136_t
Valid prediction for GlimmerHMM_glimmerT_40203-T1
Valid prediction for snap_scaffold_16-snap.2630-T1
Valid prediction for GeneMark_model.69059_t
Valid prediction for GeneMark_model.69122_t
Valid prediction for snap_scaffold_16-snap.2599-T1
Valid prediction for snap_scaffold_16-snap.2641-T1
Valid prediction for GeneMark_model.69102_t
Valid prediction for snap_scaffold_16-snap.2617-T1
Valid prediction for GeneMark_model.69038_t
Valid prediction for GeneMark_model.69081_t
Valid prediction for GlimmerHMM_glimmerT_40217-T1
Valid prediction for snap_scaffold_16-snap.2612-T1
Valid prediction for GlimmerHMM_glimmerT_40216-T1
Valid prediction for GeneMark_model.69058_t
Valid prediction for GeneMark_model.69097_t
Valid prediction for snap_scaffold_16-snap.2626-T1
Valid prediction for GlimmerHMM_glimmerT_40212-T1
Valid prediction for GeneMark_model.69138_t
Valid prediction for snap_scaffold_16-snap.2610-T1
Valid prediction for snap_scaffold_16-snap.2605-T1
Valid prediction for GeneMark_model.69083_t
Valid prediction for snap_scaffold_16-snap.2640-T1
Valid prediction for GeneMark_model.69118_t
Valid prediction for snap_scaffold_16-snap.2607-T1
Valid prediction for GeneMark_model.69106_t
Valid prediction for GeneMark_model.69047_t
Couldn't classify 70520, 70737
Sorry, prediction pasa_asmbl_17463.p1 fails validation.
(GGC)	 CA	70520-70737	GT	AGG
(GTT)	 AG	71163-71410	GT	AGG
(GAC)	 AG	71663-72147	AG	GAA
-recovered pasa_asmbl_17463.p1, terminal, 71663, 72147
-recovered pasa_asmbl_17463.p1, internal, 71163, 71410
Valid prediction for GeneMark_model.69057_t
Valid prediction for GeneMark_model.69073_t
Valid prediction for GeneMark_model.69115_t
Valid prediction for GlimmerHMM_glimmerT_40209-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2631-T1
Valid prediction for snap_scaffold_16-snap.2627-T1
Valid prediction for GeneMark_model.69075_t
Valid prediction for GeneMark_model.69049_t
Valid prediction for GeneMark_model.69080_t
Valid prediction for snap_scaffold_16-snap.2621-T1
Valid prediction for GeneMark_model.69066_t
Valid prediction for GlimmerHMM_glimmerT_40223-T1
Valid prediction for GlimmerHMM_glimmerT_40205-T1
Valid prediction for GlimmerHMM_glimmerT_40206-T1
Valid prediction for GeneMark_model.69137_t
Valid prediction for GeneMark_model.69099_t
Valid prediction for GlimmerHMM_glimmerT_40222-T1
Valid prediction for GeneMark_model.69037_t
Valid prediction for snap_scaffold_16-snap.2629-T1
Valid prediction for GlimmerHMM_glimmerT_40228-T1
Valid prediction for GlimmerHMM_glimmerT_40211-T1
Valid prediction for snap_scaffold_16-snap.2632-T1
Valid prediction for GeneMark_model.69116_t
Valid prediction for snap_scaffold_16-snap.2608-T1
Valid prediction for snap_scaffold_16-snap.2613-T1
Valid prediction for GlimmerHMM_glimmerT_40210-T1
Valid prediction for GeneMark_model.69088_t
Valid prediction for GeneMark_model.69041_t
Valid prediction for GlimmerHMM_glimmerT_40214-T1
Valid prediction for Augustus_model.g26998.t1
Valid prediction for snap_scaffold_16-snap.2604-T1
Valid prediction for snap_scaffold_16-snap.2619-T1
Valid prediction for GeneMark_model.69052_t
Valid prediction for GeneMark_model.69048_t
Valid prediction for GeneMark_model.69078_t
Valid prediction for GlimmerHMM_glimmerT_40220-T1
Valid prediction for GlimmerHMM_glimmerT_40204-T1
Valid prediction for GeneMark_model.69129_t
Valid prediction for GeneMark_model.69133_t
Valid prediction for snap_scaffold_16-snap.2615-T1
Valid prediction for snap_scaffold_16-snap.2609-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g26999.t1
Valid prediction for GeneMark_model.69104_t
Valid prediction for snap_scaffold_16-snap.2649-T1
Valid prediction for GeneMark_model.69101_t
Valid prediction for GeneMark_model.69120_t
Valid prediction for snap_scaffold_16-snap.2616-T1
Valid prediction for snap_scaffold_16-snap.2603-T1
Valid prediction for snap_scaffold_16-snap.2628-T1
Valid prediction for snap_scaffold_16-snap.2639-T1
Valid prediction for Augustus_model.g26996.t1
Valid prediction for Augustus_model.g26997.t1
Valid prediction for GeneMark_model.69045_t
Valid prediction for snap_scaffold_16-snap.2614-T1
Valid prediction for snap_scaffold_16-snap.2650-T1
Valid prediction for GeneMark_model.69071_t
Valid prediction for snap_scaffold_16-snap.2625-T1
Valid prediction for snap_scaffold_16-snap.2644-T1
Valid prediction for snap_scaffold_16-snap.2637-T1
Valid prediction for snap_scaffold_16-snap.2606-T1
Valid prediction for GeneMark_model.69109_t
Valid prediction for Augustus_model.g26994.t1
Valid prediction for GeneMark_model.69119_t
Valid prediction for snap_scaffold_16-snap.2611-T1
Valid prediction for snap_scaffold_16-snap.2602-T1
Valid prediction for GeneMark_model.69131_t
Valid prediction for GeneMark_model.69074_t
Valid prediction for GeneMark_model.69114_t
Valid prediction for GeneMark_model.69096_t
Valid prediction for GeneMark_model.69039_t
Valid prediction for GeneMark_model.69082_t
Valid prediction for GeneMark_model.69110_t
Valid prediction for GeneMark_model.69135_t
Valid prediction for snap_scaffold_16-snap.2597-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.69091_t
Valid prediction for GeneMark_model.69126_t
Valid prediction for GeneMark_model.69062_t
Valid prediction for snap_scaffold_16-snap.2600-T1
Valid prediction for GeneMark_model.69123_t
Valid prediction for snap_scaffold_16-snap.2652-T1
Valid prediction for snap_scaffold_16-snap.2624-T1
Valid prediction for GeneMark_model.69103_t
Valid prediction for GlimmerHMM_glimmerT_40219-T1
Valid prediction for GeneMark_model.69069_t
Valid prediction for GlimmerHMM_glimmerT_40215-T1
Valid prediction for GeneMark_model.69093_t
Valid prediction for Augustus_model.g26991.t1
Valid prediction for GeneMark_model.69044_t
Valid prediction for snap_scaffold_16-snap.2596-T1
Valid prediction for GeneMark_model.69084_t
Valid prediction for snap_scaffold_16-snap.2642-T1
Valid prediction for GlimmerHMM_glimmerT_40218-T1
Valid prediction for Augustus_model.g26992.t1
Valid prediction for Augustus_model.g26990.t1
Valid prediction for GlimmerHMM_glimmerT_40221-T1
Couldn't classify 210182, 210292
Sorry, prediction Augustus_model.g26995.t1 fails validation.
(ATG)	 TG	209564-209603	GT	CTG
(AGG)	 AG	210182-210292	GT	CAG
-recovered Augustus_model.g26995.t1, initial, 209564, 209603
-recovered Augustus_model.g26995.t1, internal, 210182, 210292
Valid prediction for snap_scaffold_16-snap.2643-T1
Valid prediction for GeneMark_model.69094_t
Valid prediction for GeneMark_model.69061_t
Valid prediction for GeneMark_model.69113_t
Valid prediction for GeneMark_model.69107_t
Valid prediction for GeneMark_model.69060_t
Valid prediction for GeneMark_model.69064_t
Valid prediction for GeneMark_model.69086_t
Valid prediction for GeneMark_model.69050_t
Valid prediction for GlimmerHMM_glimmerT_40208-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8042, rend_intergenic: 4592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25968, rend_intergenic: 10416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37416, rend_intergenic: 27396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53248, rend_intergenic: 37435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60886, rend_intergenic: 54255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73643, rend_intergenic: 68241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77542, rend_intergenic: 74675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85714, rend_intergenic: 77760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124510, rend_intergenic: 106348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128054, rend_intergenic: 124704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138979, rend_intergenic: 130887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143872, rend_intergenic: 140081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161367, rend_intergenic: 156789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176860, rend_intergenic: 163978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198168, rend_intergenic: 180669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210017, rend_intergenic: 207903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248503, rend_intergenic: 218112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250680, rend_intergenic: 249148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 268105, rend_intergenic: 253216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 300076, rend_intergenic: 278675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 312898, rend_intergenic: 306351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 319708, rend_intergenic: 313554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 321825
-exon list size: 1173


building trellis

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44.7    
44.8    
44.9    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
-found 61 predictions from path traversal
Error with prediction: snap lend_intergenic: 8042, rend_intergenic: 4592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25968, rend_intergenic: 10416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37416, rend_intergenic: 27396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53248, rend_intergenic: 37435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60886, rend_intergenic: 54255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73643, rend_intergenic: 68241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77542, rend_intergenic: 74675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85714, rend_intergenic: 77760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124510, rend_intergenic: 106348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128054, rend_intergenic: 124704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138979, rend_intergenic: 130887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143872, rend_intergenic: 140081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161367, rend_intergenic: 156789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176860, rend_intergenic: 163978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198168, rend_intergenic: 180669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210017, rend_intergenic: 207903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248503, rend_intergenic: 218112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250680, rend_intergenic: 249148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 268105, rend_intergenic: 253216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 300076, rend_intergenic: 278675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 312898, rend_intergenic: 306351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 319708, rend_intergenic: 313554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 283620 - 321825
-exon list size: 133


building trellis

0.7    
1.5    
2.2    
3.0    
3.7    
4.4    
5.2    
5.9    
6.7    
7.4    
8.1    
8.9    
9.6    
10.4    
11.1    
11.9    
12.6    
13.3    
14.1    
14.8    
15.6    
16.3    
17.0    
17.8    
18.5    
19.3    
20.0    
20.7    
21.5    
22.2    
23.0    
23.7    
24.4    
25.2    
25.9    
26.7    
27.4    
28.1    
28.9    
29.6    
30.4    
31.1    
31.9    
32.6    
33.3    
34.1    
34.8    
35.6    
36.3    
37.0    
37.8    
38.5    
39.3    
40.0    
40.7    
41.5    
42.2    
43.0    
43.7    
44.4    
45.2    
45.9    
46.7    
47.4    
48.1    
48.9    
49.6    
50.4    
51.1    
51.9    
52.6    
53.3    
54.1    
54.8    
55.6    
56.3    
57.0    
57.8    
58.5    
59.3    
60.0    
60.7    
61.5    
62.2    
63.0    
63.7    
64.4    
65.2    
65.9    
66.7    
67.4    
68.1    
68.9    
69.6    
70.4    
71.1    
71.9    
72.6    
73.3    
74.1    
74.8    
75.6    
76.3    
77.0    
77.8    
78.5    
79.3    
80.0    
80.7    
81.5    
82.2    
83.0    
83.7    
84.4    
85.2    
85.9    
86.7    
87.4    
88.1    
88.9    
89.6    
90.4    
91.1    
91.9    
92.6    
93.3    
94.1    
94.8    
95.6    
96.3    
97.0    
97.8    
98.5    
99.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 289651 - 321825
-exon list size: 105


building trellis

0.9    
1.9    
2.8    
3.7    
4.7    
5.6    
6.5    
7.5    
8.4    
9.3    
10.3    
11.2    
12.1    
13.1    
14.0    
15.0    
15.9    
16.8    
17.8    
18.7    
19.6    
20.6    
21.5    
22.4    
23.4    
24.3    
25.2    
26.2    
27.1    
28.0    
29.0    
29.9    
30.8    
31.8    
32.7    
33.6    
34.6    
35.5    
36.4    
37.4    
38.3    
39.3    
40.2    
41.1    
42.1    
43.0    
43.9    
44.9    
45.8    
46.7    
47.7    
48.6    
49.5    
50.5    
51.4    
52.3    
53.3    
54.2    
55.1    
56.1    
57.0    
57.9    
58.9    
59.8    
60.7    
61.7    
62.6    
63.6    
64.5    
65.4    
66.4    
67.3    
68.2    
69.2    
70.1    
71.0    
72.0    
72.9    
73.8    
74.8    
75.7    
76.6    
77.6    
78.5    
79.4    
80.4    
81.3    
82.2    
83.2    
84.1    
85.0    
86.0    
86.9    
87.9    
88.8    
89.7    
90.7    
91.6    
92.5    
93.5    
94.4    
95.3    
96.3    
97.2    
98.1    
99.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 289651 - 313279
-exon list size: 91


building trellis

1.1    
2.2    
3.2    
4.3    
5.4    
6.5    
7.5    
8.6    
9.7    
10.8    
11.8    
12.9    
14.0    
15.1    
16.1    
17.2    
18.3    
19.4    
20.4    
21.5    
22.6    
23.7    
24.7    
25.8    
26.9    
28.0    
29.0    
30.1    
31.2    
32.3    
33.3    
34.4    
35.5    
36.6    
37.6    
38.7    
39.8    
40.9    
41.9    
43.0    
44.1    
45.2    
46.2    
47.3    
48.4    
49.5    
50.5    
51.6    
52.7    
53.8    
54.8    
55.9    
57.0    
58.1    
59.1    
60.2    
61.3    
62.4    
63.4    
64.5    
65.6    
66.7    
67.7    
68.8    
69.9    
71.0    
72.0    
73.1    
74.2    
75.3    
76.3    
77.4    
78.5    
79.6    
80.6    
81.7    
82.8    
83.9    
84.9    
86.0    
87.1    
88.2    
89.2    
90.3    
91.4    
92.5    
93.5    
94.6    
95.7    
96.8    
97.8    
98.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 289651 - 310760
-exon list size: 71


building trellis

1.4    
2.7    
4.1    
5.5    
6.8    
8.2    
9.6    
11.0    
12.3    
13.7    
15.1    
16.4    
17.8    
19.2    
20.5    
21.9    
23.3    
24.7    
26.0    
27.4    
28.8    
30.1    
31.5    
32.9    
34.2    
35.6    
37.0    
38.4    
39.7    
41.1    
42.5    
43.8    
45.2    
46.6    
47.9    
49.3    
50.7    
52.1    
53.4    
54.8    
56.2    
57.5    
58.9    
60.3    
61.6    
63.0    
64.4    
65.8    
67.1    
68.5    
69.9    
71.2    
72.6    
74.0    
75.3    
76.7    
78.1    
79.5    
80.8    
82.2    
83.6    
84.9    
86.3    
87.7    
89.0    
90.4    
91.8    
93.2    
94.5    
95.9    
97.3    
98.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 289651 - 306436
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 289651 - 306386
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support