-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_12400843-12582875

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_40066-T1
Valid prediction for snap_scaffold_16-snap.2388-T1
Valid prediction for GeneMark_model.68748_t
Valid prediction for GlimmerHMM_glimmerT_40067-T1
Valid prediction for GlimmerHMM_glimmerT_40059-T1
Valid prediction for GeneMark_model.68724_t
Valid prediction for GeneMark_model.68722_t
Valid prediction for GeneMark_model.68734_t
Valid prediction for GeneMark_model.68741_t
Valid prediction for GeneMark_model.68735_t
Valid prediction for snap_scaffold_16-snap.2377-T1
Valid prediction for Augustus_model.g26921.t1
Valid prediction for GeneMark_model.68750_t
Valid prediction for GeneMark_model.68744_t
Valid prediction for GlimmerHMM_glimmerT_40062-T1
Valid prediction for GeneMark_model.68739_t
Valid prediction for GlimmerHMM_glimmerT_40063-T1
Valid prediction for GlimmerHMM_glimmerT_40055-T1
Valid prediction for snap_scaffold_16-snap.2372-T1
Valid prediction for Augustus_model.g26918.t1
Valid prediction for Augustus_model.g26919.t1
Valid prediction for GeneMark_model.68732_t
Valid prediction for snap_scaffold_16-snap.2383-T1
Valid prediction for snap_scaffold_16-snap.2385-T1
Valid prediction for GeneMark_model.68754_t
Valid prediction for GeneMark_model.68716_t
Valid prediction for snap_scaffold_16-snap.2382-T1
Valid prediction for snap_scaffold_16-snap.2368-T1
Valid prediction for snap_scaffold_16-snap.2370-T1
Valid prediction for snap_scaffold_16-snap.2365-T1
Valid prediction for GlimmerHMM_glimmerT_40065-T1
Valid prediction for snap_scaffold_16-snap.2390-T1
Valid prediction for GeneMark_model.68742_t
Valid prediction for snap_scaffold_16-snap.2360-T1
Valid prediction for snap_scaffold_16-snap.2380-T1
Valid prediction for GeneMark_model.68726_t
Valid prediction for GeneMark_model.68753_t
Valid prediction for snap_scaffold_16-snap.2373-T1
Valid prediction for snap_scaffold_16-snap.2363-T1
Valid prediction for GeneMark_model.68730_t
Valid prediction for GeneMark_model.68737_t
Valid prediction for snap_scaffold_16-snap.2386-T1
Valid prediction for GeneMark_model.68719_t
Valid prediction for GeneMark_model.68752_t
Valid prediction for GeneMark_model.68747_t
Valid prediction for GeneMark_model.68727_t
Valid prediction for snap_scaffold_16-snap.2366-T1
Valid prediction for GlimmerHMM_glimmerT_40054-T1
Valid prediction for GeneMark_model.68728_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.68746_t
Valid prediction for snap_scaffold_16-snap.2376-T1
Valid prediction for GeneMark_model.68723_t
Valid prediction for pasa_asmbl_16573.p1
Valid prediction for GlimmerHMM_glimmerT_40064-T1
Valid prediction for GeneMark_model.68751_t
Valid prediction for snap_scaffold_16-snap.2364-T1
Valid prediction for GlimmerHMM_glimmerT_40058-T1
Valid prediction for GeneMark_model.68731_t
Valid prediction for snap_scaffold_16-snap.2389-T1
Valid prediction for snap_scaffold_16-snap.2371-T1
Valid prediction for GeneMark_model.68717_t
Valid prediction for HiQ_model.g26916.t1
Valid prediction for snap_scaffold_16-snap.2384-T1
Valid prediction for snap_scaffold_16-snap.2369-T1
Valid prediction for snap_scaffold_16-snap.2378-T1
Valid prediction for GlimmerHMM_glimmerT_40068-T1
Valid prediction for GeneMark_model.68733_t
Valid prediction for Augustus_model.g26920.t1
Valid prediction for GlimmerHMM_glimmerT_40057-T1
Valid prediction for GlimmerHMM_glimmerT_40056-T1
Valid prediction for snap_scaffold_16-snap.2361-T1
Valid prediction for Augustus_model.g26922.t1
Valid prediction for snap_scaffold_16-snap.2379-T1
Valid prediction for GlimmerHMM_glimmerT_40060-T1
Valid prediction for GeneMark_model.68740_t
Valid prediction for snap_scaffold_16-snap.2358-T1
Valid prediction for Augustus_model.g26917.t1
Valid prediction for snap_scaffold_16-snap.2387-T1
Valid prediction for snap_scaffold_16-snap.2362-T1
Valid prediction for snap_scaffold_16-snap.2367-T1
Valid prediction for snap_scaffold_16-snap.2375-T1
Valid prediction for GeneMark_model.68755_t
Valid prediction for GeneMark_model.68749_t
Valid prediction for snap_scaffold_16-snap.2359-T1
Valid prediction for GeneMark_model.68745_t
Valid prediction for snap_scaffold_16-snap.2374-T1
Valid prediction for GeneMark_model.68738_t
Valid prediction for GlimmerHMM_glimmerT_40053-T1
Valid prediction for GeneMark_model.68721_t
Valid prediction for snap_scaffold_16-snap.2381-T1
Valid prediction for GeneMark_model.68718_t
Valid prediction for GeneMark_model.68720_t
Valid prediction for GeneMark_model.68736_t
Valid prediction for GeneMark_model.68743_t
Valid prediction for GeneMark_model.68725_t
Valid prediction for GeneMark_model.68729_t
Valid prediction for GlimmerHMM_glimmerT_40061-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17596, rend_intergenic: 11534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43459, rend_intergenic: 42669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67469, rend_intergenic: 61649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82324, rend_intergenic: 77287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88247, rend_intergenic: 83304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110776, rend_intergenic: 108182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120960, rend_intergenic: 120345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157071, rend_intergenic: 156996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163249, rend_intergenic: 158934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182033
-exon list size: 444


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.6    
1.8    
2.0    
2.2    
2.5    
2.7    
2.9    
3.1    
3.4    
3.6    
3.8    
4.0    
4.3    
4.5    
4.7    
4.9    
5.2    
5.4    
5.6    
5.8    
6.1    
6.3    
6.5    
6.7    
7.0    
7.2    
7.4    
7.6    
7.8    
8.1    
8.3    
8.5    
8.7    
9.0    
9.2    
9.4    
9.6    
9.9    
10.1    
10.3    
10.5    
10.8    
11.0    
11.2    
11.4    
11.7    
11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.2    
13.5    
13.7    
13.9    
14.1    
14.3    
14.6    
14.8    
15.0    
15.2    
15.5    
15.7    
15.9    
16.1    
16.4    
16.6    
16.8    
17.0    
17.3    
17.5    
17.7    
17.9    
18.2    
18.4    
18.6    
18.8    
19.1    
19.3    
19.5    
19.7    
20.0    
20.2    
20.4    
20.6    
20.9    
21.1    
21.3    
21.5    
21.7    
22.0    
22.2    
22.4    
22.6    
22.9    
23.1    
23.3    
23.5    
23.8    
24.0    
24.2    
24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.2    
26.5    
26.7    
26.9    
27.1    
27.4    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
28.9    
29.1    
29.4    
29.6    
29.8    
30.0    
30.3    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.7    
33.0    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.5    
34.8    
35.0    
35.2    
35.4    
35.7    
35.9    
36.1    
36.3    
36.5    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.3    
38.6    
38.8    
39.0    
39.2    
39.5    
39.7    
39.9    
40.1    
40.4    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
41.9    
42.2    
42.4    
42.6    
42.8    
43.0    
43.3    
43.5    
43.7    
43.9    
44.2    
44.4    
44.6    
44.8    
45.1    
45.3    
45.5    
45.7    
46.0    
46.2    
46.4    
46.6    
46.9    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.4    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.6    
51.8    
52.0    
52.2    
52.5    
52.7    
52.9    
53.1    
53.4    
53.6    
53.8    
54.0    
54.3    
54.5    
54.7    
54.9    
55.2    
55.4    
55.6    
55.8    
56.1    
56.3    
56.5    
56.7    
57.0    
57.2    
57.4    
57.6    
57.8    
58.1    
58.3    
58.5    
58.7    
59.0    
59.2    
59.4    
59.6    
59.9    
60.1    
60.3    
60.5    
60.8    
61.0    
61.2    
61.4    
61.7    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.2    
63.5    
63.7    
63.9    
64.1    
64.3    
64.6    
64.8    
65.0    
65.2    
65.5    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.0    
67.3    
67.5    
67.7    
67.9    
68.2    
68.4    
68.6    
68.8    
69.1    
69.3    
69.5    
69.7    
70.0    
70.2    
70.4    
70.6    
70.9    
71.1    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.6    
72.9    
73.1    
73.3    
73.5    
73.8    
74.0    
74.2    
74.4    
74.7    
74.9    
75.1    
75.3    
75.6    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.1    
77.4    
77.6    
77.8    
78.0    
78.3    
78.5    
78.7    
78.9    
79.1    
79.4    
79.6    
79.8    
80.0    
80.3    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.8    
82.1    
82.3    
82.5    
82.7    
83.0    
83.2    
83.4    
83.6    
83.9    
84.1    
84.3    
84.5    
84.8    
85.0    
85.2    
85.4    
85.7    
85.9    
86.1    
86.3    
86.5    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.3    
88.6    
88.8    
89.0    
89.2    
89.5    
89.7    
89.9    
90.1    
90.4    
90.6    
90.8    
91.0    
91.3    
91.5    
91.7    
91.9    
92.2    
92.4    
92.6    
92.8    
93.0    
93.3    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.7    
96.0    
96.2    
96.4    
96.6    
96.9    
97.1    
97.3    
97.5    
97.8    
98.0    
98.2    
98.4    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 17596, rend_intergenic: 11534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43459, rend_intergenic: 42669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67469, rend_intergenic: 61649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82324, rend_intergenic: 77287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88247, rend_intergenic: 83304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110776, rend_intergenic: 108182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120960, rend_intergenic: 120345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157071, rend_intergenic: 156996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163249, rend_intergenic: 158934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support