-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_11976181-12194376

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_40006-T1
Valid prediction for GeneMark_model.68645_t
Valid prediction for CodingQuarry_transcript_20074-T1
Valid prediction for GlimmerHMM_glimmerT_40003-T1
Valid prediction for Augustus_model.g26898.t1
Valid prediction for GlimmerHMM_glimmerT_40020-T1
Valid prediction for GlimmerHMM_glimmerT_40017-T1
Valid prediction for snap_scaffold_16-snap.2321-T1
Valid prediction for snap_scaffold_16-snap.2302-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GeneMark_model.68628_t
Valid prediction for GeneMark_model.68603_t
Valid prediction for Augustus_model.g26895.t1
Valid prediction for GlimmerHMM_glimmerT_40014-T1
Valid prediction for snap_scaffold_16-snap.2300-T1
Valid prediction for GeneMark_model.68606_t
Valid prediction for GlimmerHMM_glimmerT_40021-T1
Valid prediction for GeneMark_model.68620_t
Valid prediction for snap_scaffold_16-snap.2295-T1
Couldn't classify 152319, 152412
Couldn't classify 156604, 156696
Sorry, prediction pasa_asmbl_17436.p1 fails validation.
(TCC)	 AT	152319-152412	GT	TCG
(TAC)	 AG	152532-152627	GT	AGG
(CTA)	 AG	152929-152993	GT	AGG
(ATC)	 AG	154074-154209	GT	AGG
(ATC)	 AG	154401-154472	GT	AGG
(TCA)	 AG	155526-155570	GT	AGG
(CAT)	 AG	155945-156021	GT	GCG
(GTT)	 AG	156604-156696	GC	CGG
-recovered pasa_asmbl_17436.p1, internal, 152532, 152627
-recovered pasa_asmbl_17436.p1, internal, 152929, 152993
-recovered pasa_asmbl_17436.p1, internal, 154074, 154209
-recovered pasa_asmbl_17436.p1, internal, 154401, 154472
-recovered pasa_asmbl_17436.p1, internal, 155526, 155570
-recovered pasa_asmbl_17436.p1, internal, 155945, 156021
-recovered pasa_asmbl_17436.p1, internal, 156604, 156696
Valid prediction for GeneMark_model.68634_t
Valid prediction for Augustus_model.g26897.t1
Valid prediction for snap_scaffold_16-snap.2322-T1
Valid prediction for CodingQuarry_transcript_20069-T1
Valid prediction for GlimmerHMM_glimmerT_40027-T1
Valid prediction for GeneMark_model.68662_t
Valid prediction for snap_scaffold_16-snap.2285-T1
Valid prediction for Augustus_model.g26896.t1
Valid prediction for GeneMark_model.68664_t
Valid prediction for snap_scaffold_16-snap.2279-T1
Valid prediction for GlimmerHMM_glimmerT_40012-T1
Valid prediction for GeneMark_model.68658_t
Valid prediction for snap_scaffold_16-snap.2303-T1
Valid prediction for GeneMark_model.68625_t
Valid prediction for GlimmerHMM_glimmerT_40023-T1
Valid prediction for HiQ_model.g26893.t1
Valid prediction for GeneMark_model.68649_t
Valid prediction for snap_scaffold_16-snap.2294-T1
Valid prediction for snap_scaffold_16-snap.2286-T1
Valid prediction for GeneMark_model.68643_t
Valid prediction for GlimmerHMM_glimmerT_40016-T1
Valid prediction for GeneMark_model.68632_t
Valid prediction for GeneMark_model.68651_t
Valid prediction for snap_scaffold_16-snap.2306-T1
Valid prediction for snap_scaffold_16-snap.2297-T1
Valid prediction for Augustus_model.g26901.t1
Valid prediction for Augustus_model.g26904.t1
Valid prediction for GeneMark_model.68656_t
Valid prediction for GeneMark_model.68638_t
Valid prediction for snap_scaffold_16-snap.2291-T1
Couldn't classify 42430, 42588
Sorry, prediction pasa_asmbl_17429.p1 fails validation.
(CGG)	 AA	42430-42588	GT	AGG
(ATG)	 AG	42763-42864	GT	AGG
(GTC)	 AG	42969-43097	TT	AAT
-recovered pasa_asmbl_17429.p1, initial, 42763, 42864
-recovered pasa_asmbl_17429.p1, terminal, 42969, 43097
-recovered pasa_asmbl_17429.p1, internal, 42763, 42864
Valid prediction for HiQ_model.g26891.t1
Valid prediction for GeneMark_model.68640_t
Valid prediction for GeneMark_model.68609_t
Valid prediction for GeneMark_model.68622_t
Valid prediction for snap_scaffold_16-snap.2318-T1
Valid prediction for GeneMark_model.68627_t
Valid prediction for GeneMark_model.68612_t
Valid prediction for snap_scaffold_16-snap.2310-T1
Couldn't classify 70536, 70849
Sorry, prediction pasa_asmbl_17434.p1 fails validation.
(TCC)	 GG	70536-70849	GT	ACG
(GTT)	 AG	70990-71060	GT	GTG
(GTT)	 AG	71189-71332	GT	GGG
(ACG)	 AG	72071-72231	GT	CGG
(GTT)	 AG	72385-72475	GT	TGG
(GAC)	 AG	72779-72861	AG	GAA
-recovered pasa_asmbl_17434.p1, terminal, 72779, 72861
-recovered pasa_asmbl_17434.p1, internal, 70990, 71060
-recovered pasa_asmbl_17434.p1, internal, 71189, 71332
-recovered pasa_asmbl_17434.p1, internal, 72071, 72231
-recovered pasa_asmbl_17434.p1, internal, 72385, 72475
Valid prediction for GlimmerHMM_glimmerT_40009-T1
Valid prediction for GlimmerHMM_glimmerT_40028-T1
Valid prediction for Augustus_model.g26907.t1
Valid prediction for snap_scaffold_16-snap.2316-T1
Valid prediction for GeneMark_model.68630_t
Valid prediction for snap_scaffold_16-snap.2287-T1
Valid prediction for GeneMark_model.68614_t
Valid prediction for CodingQuarry_transcript_20071-T1
Valid prediction for snap_scaffold_16-snap.2283-T1
Valid prediction for GlimmerHMM_glimmerT_40015-T1
Valid prediction for GeneMark_model.68616_t
Valid prediction for GeneMark_model.68654_t
Valid prediction for GeneMark_model.68647_t
Valid prediction for GeneMark_model.68659_t
Valid prediction for Augustus_model.g26902.t1
Valid prediction for GeneMark_model.68636_t
Valid prediction for snap_scaffold_16-snap.2301-T1
Valid prediction for snap_scaffold_16-snap.2323-T1
Valid prediction for snap_scaffold_16-snap.2319-T1
Valid prediction for GeneMark_model.68631_t
Valid prediction for snap_scaffold_16-snap.2298-T1
Valid prediction for GeneMark_model.68626_t
Valid prediction for snap_scaffold_16-snap.2312-T1
Valid prediction for snap_scaffold_16-snap.2314-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2288-T1
Valid prediction for GeneMark_model.68633_t
Valid prediction for CodingQuarry_transcript_20068-T1
Valid prediction for CodingQuarry_transcript_20070-T1
Valid prediction for GeneMark_model.68624_t
Valid prediction for HiQ_model.g26892.t1
Valid prediction for GeneMark_model.68646_t
Valid prediction for GeneMark_model.68661_t
Valid prediction for snap_scaffold_16-snap.2320-T1
Valid prediction for GeneMark_model.68641_t
Valid prediction for snap_scaffold_16-snap.2324-T1
Valid prediction for GeneMark_model.68607_t
Valid prediction for GeneMark_model.68639_t
Valid prediction for snap_scaffold_16-snap.2313-T1
Valid prediction for snap_scaffold_16-snap.2311-T1
Valid prediction for GlimmerHMM_glimmerT_40005-T1
Valid prediction for snap_scaffold_16-snap.2317-T1
Valid prediction for GlimmerHMM_glimmerT_40024-T1
Valid prediction for snap_scaffold_16-snap.2292-T1
Valid prediction for snap_scaffold_16-snap.2307-T1
Valid prediction for GlimmerHMM_glimmerT_40018-T1
Couldn't classify 195273, 195438
Sorry, prediction pasa_asmbl_16557.p1 fails validation.
(GAA)	 AG	195273-195438	GT	TGG
(GGG)	 AG	197410-197606	GC	GAG
-recovered pasa_asmbl_16557.p1, terminal, 197410, 197606
-recovered pasa_asmbl_16557.p1, internal, 195273, 195438
-recovered pasa_asmbl_16557.p1, internal, 197410, 197606
Valid prediction for pasa_asmbl_16561.p1
Valid prediction for GlimmerHMM_glimmerT_40011-T1
Valid prediction for snap_scaffold_16-snap.2305-T1
Valid prediction for snap_scaffold_16-snap.2282-T1
Valid prediction for GeneMark_model.68604_t
Valid prediction for Augustus_model.g26899.t1
Valid prediction for GeneMark_model.68637_t
Couldn't classify 159371, 159508
Couldn't classify 160666, 160722
Sorry, prediction pasa_asmbl_16567.p1 fails validation.
(CAG)	 TT	159371-159508	GT	AGG
(CTG)	 AG	159743-159856	GT	CTG
(GGA)	 AG	160066-160165	GT	AGG
(AGC)	 AG	160403-160497	GT	AGG
(TTT)	 AG	160666-160722	GT	GCG
-recovered pasa_asmbl_16567.p1, internal, 159743, 159856
-recovered pasa_asmbl_16567.p1, internal, 160066, 160165
-recovered pasa_asmbl_16567.p1, internal, 160403, 160497
-recovered pasa_asmbl_16567.p1, internal, 160666, 160722
Valid prediction for GlimmerHMM_glimmerT_40019-T1
Valid prediction for GeneMark_model.68623_t
Valid prediction for snap_scaffold_16-snap.2293-T1
Valid prediction for GeneMark_model.68608_t
Valid prediction for HiQ_model.g26900.t1
Valid prediction for GeneMark_model.68618_t
Valid prediction for HiQ_model.g26890.t1
Valid prediction for CodingQuarry_transcript_20072-T1
Couldn't classify 161790, 161887
Couldn't classify 163513, 163673
Sorry, prediction pasa_asmbl_16566.p1 fails validation.
(GCG)	 AT	161790-161887	GT	CTG
(ACA)	 AG	162161-162239	GT	AGG
(GTG)	 AG	162394-162519	GT	AGG
(ATG)	 AG	162775-162902	GT	AGG
(GCA)	 AG	163233-163408	GT	CGG
(GTC)	 AG	163513-163673	GC	AGG
-recovered pasa_asmbl_16566.p1, initial, 162775, 162902
-recovered pasa_asmbl_16566.p1, internal, 162161, 162239
-recovered pasa_asmbl_16566.p1, internal, 162394, 162519
-recovered pasa_asmbl_16566.p1, internal, 162775, 162902
-recovered pasa_asmbl_16566.p1, internal, 163233, 163408
-recovered pasa_asmbl_16566.p1, internal, 163513, 163673
Valid prediction for GlimmerHMM_glimmerT_40026-T1
Valid prediction for GeneMark_model.68655_t
Valid prediction for snap_scaffold_16-snap.2289-T1
Valid prediction for Augustus_model.g26903.t1
Valid prediction for GlimmerHMM_glimmerT_40022-T1
Valid prediction for Augustus_model.g26908.t1
Valid prediction for GlimmerHMM_glimmerT_40007-T1
Valid prediction for snap_scaffold_16-snap.2281-T1
Valid prediction for GeneMark_model.68642_t
Valid prediction for GeneMark_model.68635_t
Valid prediction for snap_scaffold_16-snap.2296-T1
Valid prediction for GeneMark_model.68617_t
Valid prediction for GeneMark_model.68650_t
Valid prediction for snap_scaffold_16-snap.2308-T1
Valid prediction for GeneMark_model.68629_t
Valid prediction for Augustus_model.g26887.t1
Valid prediction for Augustus_model.g26889.t1
Valid prediction for snap_scaffold_16-snap.2290-T1
Couldn't classify 74171, 74291
Sorry, prediction pasa_asmbl_16568.p1 fails validation.
(CAG)	 AC	74171-74291	GC	TGG
(ACG)	 AG	74496-74675	GT	TGG
(GTC)	 AG	75001-75119	GT	AGG
(GAT)	 AG	75284-75349	GT	AGG
(TGT)	 AG	75552-75752	GG	GAG
-recovered pasa_asmbl_16568.p1, terminal, 75552, 75752
-recovered pasa_asmbl_16568.p1, internal, 74496, 74675
-recovered pasa_asmbl_16568.p1, internal, 75001, 75119
-recovered pasa_asmbl_16568.p1, internal, 75284, 75349
Couldn't classify 190556, 190577
Couldn't classify 195060, 195176
Sorry, prediction pasa_asmbl_16558.p1 fails validation.
(TTC)	 GC	190556-190577	GT	ACG
(ATG)	 AG	191610-191803	GT	TGG
(GAC)	 AG	193495-193560	GT	TGG
(GAG)	 AG	195060-195176	AA	AGA
add_exon() Sorry, pasa_asmbl_16558.p1 191610-191803-initial-1 is invalid.
-recovered pasa_asmbl_16558.p1, initial, 191610, 191803
-recovered pasa_asmbl_16558.p1, internal, 191610, 191803
-recovered pasa_asmbl_16558.p1, internal, 193495, 193560
Valid prediction for GeneMark_model.68648_t
Valid prediction for GeneMark_model.68605_t
Valid prediction for GeneMark_model.68653_t
Valid prediction for pasa_asmbl_16570.p1
Valid prediction for GlimmerHMM_glimmerT_40008-T1
Valid prediction for GlimmerHMM_glimmerT_40025-T1
Valid prediction for Augustus_model.g26905.t1
Valid prediction for snap_scaffold_16-snap.2299-T1
Valid prediction for Augustus_model.g26906.t1
Valid prediction for GlimmerHMM_glimmerT_40013-T1
Valid prediction for GeneMark_model.68644_t
Valid prediction for GeneMark_model.68663_t
Valid prediction for CodingQuarry_transcript_20073-T1
Valid prediction for Augustus_model.g26888.t1
Valid prediction for GeneMark_model.68610_t
Valid prediction for snap_scaffold_16-snap.2280-T1
Valid prediction for GeneMark_model.68660_t
Valid prediction for Augustus_model.g26894.t1
Valid prediction for GeneMark_model.68652_t
Valid prediction for GeneMark_model.68619_t
Valid prediction for GeneMark_model.68621_t
Valid prediction for GlimmerHMM_glimmerT_40004-T1
Valid prediction for GeneMark_model.68615_t
Valid prediction for snap_scaffold_16-snap.2284-T1
Valid prediction for GlimmerHMM_glimmerT_40010-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_16-snap.2315-T1
Valid prediction for snap_scaffold_16-snap.2309-T1
Valid prediction for snap_scaffold_16-snap.2304-T1
Couldn't classify 176220, 176388
Sorry, prediction pasa_asmbl_16559.p1 fails validation.
(TAC)	 CC	176220-176388	GT	CGG
(ACT)	 AG	176770-176892	GT	ATG
(TGG)	 AG	177030-177192	GT	AGG
(AGC)	 AG	177291-177351	TG	AAT
-recovered pasa_asmbl_16559.p1, terminal, 177291, 177351
-recovered pasa_asmbl_16559.p1, internal, 176770, 176892
-recovered pasa_asmbl_16559.p1, internal, 177030, 177192

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16564, rend_intergenic: 3549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22344, rend_intergenic: 21439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22613, rend_intergenic: 22440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28635, rend_intergenic: 22767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35112, rend_intergenic: 30824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52485, rend_intergenic: 48524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56383, rend_intergenic: 53426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124587, rend_intergenic: 117231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129331, rend_intergenic: 127772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156711, rend_intergenic: 155039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157737, rend_intergenic: 156717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160883, rend_intergenic: 158399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164037, rend_intergenic: 161335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176150, rend_intergenic: 170104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191786, rend_intergenic: 177930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201186, rend_intergenic: 196653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 218196
-exon list size: 751


building trellis

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47.5    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.5    
48.6    
48.7    
48.9    
49.0    
49.1    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.9    
51.0    
51.1    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.4    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
89.0    
89.1    
89.2    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 16564, rend_intergenic: 3549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22344, rend_intergenic: 21439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22613, rend_intergenic: 22440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28635, rend_intergenic: 22767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35112, rend_intergenic: 30824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52485, rend_intergenic: 48524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56383, rend_intergenic: 53426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124587, rend_intergenic: 117231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129331, rend_intergenic: 127772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156711, rend_intergenic: 155039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157737, rend_intergenic: 156717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160883, rend_intergenic: 158399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164037, rend_intergenic: 161335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176150, rend_intergenic: 170104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191786, rend_intergenic: 177930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201186, rend_intergenic: 196653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 205900 - 218196
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support