-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_16/scaffold_16_11278936-11460034

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.68410_t
Valid prediction for GeneMark_model.68416_t
Valid prediction for Augustus_model.g26834.t1
Valid prediction for GeneMark_model.68428_t
Valid prediction for GlimmerHMM_glimmerT_39925-T1
Valid prediction for GlimmerHMM_glimmerT_39908-T1
Valid prediction for CodingQuarry_transcript_20048-T1
Valid prediction for GeneMark_model.68431_t
Valid prediction for snap_scaffold_16-snap.2149-T1
Valid prediction for snap_scaffold_16-snap.2150-T1
Valid prediction for GeneMark_model.68408_t
Valid prediction for snap_scaffold_16-snap.2121-T1
Valid prediction for snap_scaffold_16-snap.2115-T1
Valid prediction for snap_scaffold_16-snap.2117-T1
Valid prediction for GeneMark_model.68424_t
Valid prediction for snap_scaffold_16-snap.2131-T1
Valid prediction for snap_scaffold_16-snap.2129-T1
Valid prediction for CodingQuarry_transcript_20056-T1
Valid prediction for GlimmerHMM_glimmerT_39913-T1
Valid prediction for GlimmerHMM_glimmerT_39924-T1
Valid prediction for snap_scaffold_16-snap.2142-T1
Valid prediction for GeneMark_model.68445_t
Valid prediction for Augustus_model.g26825.t1
Valid prediction for snap_scaffold_16-snap.2140-T1
Valid prediction for snap_scaffold_16-snap.2144-T1
Couldn't classify 3648, 3881
Couldn't classify 8167, 8188
Sorry, prediction pasa_asmbl_17373.p1 fails validation.
(TCC)	 GG	3648-3881	GT	AGG
(GTG)	 AG	4458-4557	GT	AGG
(ATG)	 AG	4664-4803	GT	AGG
(GAG)	 AG	5179-5287	GT	TGG
(GTC)	 AG	7778-7979	GT	CTG
(GTT)	 AG	8167-8188	GG	GGG
add_exon() Sorry, pasa_asmbl_17373.p1 4664-4803-initial-1 is invalid.
-recovered pasa_asmbl_17373.p1, initial, 4664, 4803
-recovered pasa_asmbl_17373.p1, internal, 4458, 4557
-recovered pasa_asmbl_17373.p1, internal, 4664, 4803
-recovered pasa_asmbl_17373.p1, internal, 5179, 5287
-recovered pasa_asmbl_17373.p1, internal, 7778, 7979
Valid prediction for GeneMark_model.68414_t
Valid prediction for snap_scaffold_16-snap.2146-T1
Valid prediction for GeneMark_model.68423_t
Valid prediction for GeneMark_model.68419_t
Valid prediction for GlimmerHMM_glimmerT_39921-T1
Valid prediction for HiQ_model.g26820.t1
Valid prediction for Augustus_model.g26828.t1
Valid prediction for snap_scaffold_16-snap.2136-T1
Valid prediction for Augustus_model.g26836.t1
Valid prediction for GeneMark_model.68427_t
Valid prediction for snap_scaffold_16-snap.2130-T1
Valid prediction for GeneMark_model.68441_t
Valid prediction for GlimmerHMM_glimmerT_39917-T1
Valid prediction for GlimmerHMM_glimmerT_39918-T1
Valid prediction for GlimmerHMM_glimmerT_39919-T1
Valid prediction for Augustus_model.g26831.t1
Couldn't classify 160925, 161116
Sorry, prediction pasa_asmbl_17392.p1 fails validation.
(AGC)	 GG	160925-161116	GT	CTG
(ACT)	 AG	161471-161587	GT	AGG
(GCT)	 AG	162098-162172	GT	AGG
(CTG)	 AG	163017-163208	CC	GAC
-recovered pasa_asmbl_17392.p1, terminal, 163017, 163208
-recovered pasa_asmbl_17392.p1, internal, 161471, 161587
-recovered pasa_asmbl_17392.p1, internal, 162098, 162172
Valid prediction for GeneMark_model.68435_t
Valid prediction for GlimmerHMM_glimmerT_39927-T1
Valid prediction for GlimmerHMM_glimmerT_39930-T1
Valid prediction for GlimmerHMM_glimmerT_39907-T1
Couldn't classify 23561, 23584
Sorry, prediction pasa_asmbl_17377.p1 fails validation.
(GTG)	 AG	23561-23584	GT	GGG
(TTC)	 AG	23686-23991	GA	AGG
-recovered pasa_asmbl_17377.p1, terminal, 23686, 23991
-recovered pasa_asmbl_17377.p1, internal, 23561, 23584
Valid prediction for pasa_asmbl_17379.p1
Valid prediction for GeneMark_model.68418_t
Valid prediction for GlimmerHMM_glimmerT_39905-T1
Couldn't classify 146160, 146294
Sorry, prediction pasa_asmbl_17389.p1 fails validation.
(CAG)	 CG	146160-146294	GT	AGG
(AAT)	 AG	146425-146516	GT	AGG
(CCT)	 AG	146626-146770	GT	AGG
(ATG)	 AG	146861-146957	GT	AGG
(GGG)	 AG	147061-147141	GT	TGG
(GGT)	 AG	147452-147735	CA	GAC
-recovered pasa_asmbl_17389.p1, initial, 146861, 146957
-recovered pasa_asmbl_17389.p1, terminal, 147452, 147735
-recovered pasa_asmbl_17389.p1, internal, 146425, 146516
-recovered pasa_asmbl_17389.p1, internal, 146626, 146770
-recovered pasa_asmbl_17389.p1, internal, 146861, 146957
-recovered pasa_asmbl_17389.p1, internal, 147061, 147141
Valid prediction for GeneMark_model.68412_t
Valid prediction for HiQ_model.g26822.t1
Valid prediction for GeneMark_model.68443_t
Valid prediction for Augustus_model.g26823.t1
Valid prediction for GeneMark_model.68437_t
Valid prediction for snap_scaffold_16-snap.2122-T1
Valid prediction for GlimmerHMM_glimmerT_39906-T1
Couldn't classify 142441, 142534
Couldn't classify 145746, 145762
Sorry, prediction pasa_asmbl_17388.p1 fails validation.
(CTG)	 AT	142441-142534	GT	AGG
(GAG)	 AG	143620-143709	GT	CTG
(CCT)	 AG	144970-145127	GT	GGG
(TGC)	 AG	145349-145412	GT	CGG
(GCA)	 AG	145746-145762	AT	CCA
-recovered pasa_asmbl_17388.p1, internal, 143620, 143709
-recovered pasa_asmbl_17388.p1, internal, 144970, 145127
-recovered pasa_asmbl_17388.p1, internal, 145349, 145412
Valid prediction for GlimmerHMM_glimmerT_39903-T1
Valid prediction for GlimmerHMM_glimmerT_39902-T1
Couldn't classify 10728, 10805
Couldn't classify 18450, 18589
Sorry, prediction pasa_asmbl_17374.p1 fails validation.
(CTG)	 CT	10728-10805	GT	AGG
(CTG)	 AG	11218-11346	GT	AGG
(CTG)	 AG	11712-11870	GT	AGG
(ATC)	 AG	12326-12470	GT	GGG
(GAG)	 AG	12649-12736	GT	AGG
(GAT)	 AG	12830-12870	GT	CGG
(TGG)	 AG	13050-13219	GT	AGG
(GTC)	 AG	13625-13776	GT	AGG
(GTC)	 AG	14945-15117	GT	CAG
(CGA)	 AG	15449-15609	GT	AGG
(GCC)	 AG	15983-16113	GT	AGG
(GGG)	 AG	16309-16438	GT	AGG
(AAA)	 AG	16668-16803	GT	AGG
(ACA)	 AG	17296-17434	GT	ACG
(GCT)	 AG	17897-17966	GT	AGG
(GAC)	 AG	18062-18221	GT	GAG
(AGG)	 AG	18450-18589	GT	AGG
add_exon() Sorry, pasa_asmbl_17374.p1 12649-12736-terminal-3 is invalid.
-recovered pasa_asmbl_17374.p1, terminal, 12649, 12736
-recovered pasa_asmbl_17374.p1, internal, 11218, 11346
-recovered pasa_asmbl_17374.p1, internal, 11712, 11870
-recovered pasa_asmbl_17374.p1, internal, 12326, 12470
-recovered pasa_asmbl_17374.p1, internal, 12649, 12736
-recovered pasa_asmbl_17374.p1, internal, 12830, 12870
-recovered pasa_asmbl_17374.p1, internal, 13050, 13219
-recovered pasa_asmbl_17374.p1, internal, 13625, 13776
-recovered pasa_asmbl_17374.p1, internal, 14945, 15117
-recovered pasa_asmbl_17374.p1, internal, 15449, 15609
-recovered pasa_asmbl_17374.p1, internal, 15983, 16113
-recovered pasa_asmbl_17374.p1, internal, 16309, 16438
-recovered pasa_asmbl_17374.p1, internal, 16668, 16803
-recovered pasa_asmbl_17374.p1, internal, 17296, 17434
-recovered pasa_asmbl_17374.p1, internal, 17897, 17966
-recovered pasa_asmbl_17374.p1, internal, 18062, 18221
-recovered pasa_asmbl_17374.p1, internal, 18450, 18589
Valid prediction for snap_scaffold_16-snap.2124-T1
Valid prediction for snap_scaffold_16-snap.2132-T1
Valid prediction for snap_scaffold_16-snap.2125-T1
Valid prediction for snap_scaffold_16-snap.2123-T1
Valid prediction for snap_scaffold_16-snap.2138-T1
Valid prediction for GeneMark_model.68439_t
Valid prediction for GlimmerHMM_glimmerT_39923-T1
Valid prediction for GeneMark_model.68434_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.68417_t
Valid prediction for CodingQuarry_transcript_20052-T1
Valid prediction for GlimmerHMM_glimmerT_39928-T1
Couldn't classify 28981, 29168
Sorry, prediction pasa_asmbl_16525.p1 fails validation.
(CCC)	 CT	28981-29168	GT	AGG
(TCG)	 AG	29283-29454	GT	AGG
(TTC)	 AG	29999-30046	GG	GAG
-recovered pasa_asmbl_16525.p1, terminal, 29999, 30046
-recovered pasa_asmbl_16525.p1, internal, 29283, 29454
Valid prediction for CodingQuarry_transcript_20055-T1
Valid prediction for GeneMark_model.68430_t
Couldn't classify 61581, 61782
Sorry, prediction CodingQuarry_transcript_20054-T1 fails validation.
(ATG)	 AC	59961-59983	GT	AGG
(CAG)	 CT	61581-61782	GT	AGG
(ACA)	 AG	62039-62134	GT	AGG
(GAG)	 AG	63170-63403	GT	AGG
(ACA)	 AG	63703-63725	GT	AAG
(GAT)	 AG	63832-63991	TG	GAT
-recovered CodingQuarry_transcript_20054-T1, initial, 59961, 59983
-recovered CodingQuarry_transcript_20054-T1, terminal, 63832, 63991
-recovered CodingQuarry_transcript_20054-T1, internal, 62039, 62134
-recovered CodingQuarry_transcript_20054-T1, internal, 63170, 63403
-recovered CodingQuarry_transcript_20054-T1, internal, 63703, 63725
Valid prediction for Augustus_model.g26826.t1
Valid prediction for snap_scaffold_16-snap.2137-T1
Valid prediction for GeneMark_model.68422_t
Valid prediction for GeneMark_model.68432_t
Valid prediction for GlimmerHMM_glimmerT_39914-T1
Valid prediction for Augustus_model.g26833.t1
Valid prediction for Augustus_model.g26830.t1
Valid prediction for GeneMark_model.68429_t
Couldn't classify 61581, 61782
Sorry, prediction CodingQuarry_transcript_20051-T1 fails validation.
(ATG)	 AC	59961-59983	GT	AGG
(CAG)	 CT	61581-61782	GT	AGG
(ACA)	 AG	62039-62134	GT	AGG
(GAG)	 AG	63170-63403	GT	AGG
(ACA)	 AG	63703-63725	GT	AAG
(GAT)	 AG	63832-63956	GT	AGG
(ATG)	 AG	64481-64638	CT	AGC
-recovered CodingQuarry_transcript_20051-T1, initial, 59961, 59983
-recovered CodingQuarry_transcript_20051-T1, terminal, 64481, 64638
-recovered CodingQuarry_transcript_20051-T1, internal, 62039, 62134
-recovered CodingQuarry_transcript_20051-T1, internal, 63170, 63403
-recovered CodingQuarry_transcript_20051-T1, internal, 63703, 63725
-recovered CodingQuarry_transcript_20051-T1, internal, 63832, 63956
Valid prediction for Augustus_model.g26824.t1
Valid prediction for GeneMark_model.68442_t
Valid prediction for GeneMark_model.68421_t
Valid prediction for snap_scaffold_16-snap.2119-T1
Valid prediction for GeneMark_model.68438_t
Valid prediction for GeneMark_model.68425_t
Valid prediction for GlimmerHMM_glimmerT_39926-T1
Valid prediction for pasa_asmbl_16519.p1
Valid prediction for snap_scaffold_16-snap.2141-T1
Valid prediction for snap_scaffold_16-snap.2152-T1
Valid prediction for GeneMark_model.68415_t
Valid prediction for snap_scaffold_16-snap.2148-T1
Valid prediction for GeneMark_model.68411_t
Valid prediction for GeneMark_model.68433_t
Valid prediction for GlimmerHMM_glimmerT_39920-T1
Valid prediction for snap_scaffold_16-snap.2139-T1
Valid prediction for GlimmerHMM_glimmerT_39909-T1
Valid prediction for snap_scaffold_16-snap.2118-T1
Couldn't classify 28517, 28652
Sorry, prediction pasa_asmbl_16526.p1 fails validation.
(ATG)	 AC	26448-26483	GT	TGG
(GCT)	 AG	26608-26706	GT	AGG
(TTG)	 AG	27814-27947	GT	CGG
(GTC)	 AG	28517-28652	GA	ACG
-recovered pasa_asmbl_16526.p1, initial, 26448, 26483
-recovered pasa_asmbl_16526.p1, internal, 26608, 26706
-recovered pasa_asmbl_16526.p1, internal, 27814, 27947
Valid prediction for snap_scaffold_16-snap.2151-T1
Valid prediction for GlimmerHMM_glimmerT_39929-T1
Valid prediction for snap_scaffold_16-snap.2145-T1
Valid prediction for GlimmerHMM_glimmerT_39916-T1
Valid prediction for Augustus_model.g26827.t1
Valid prediction for GlimmerHMM_glimmerT_39904-T1
Valid prediction for GlimmerHMM_glimmerT_39910-T1
Valid prediction for GeneMark_model.68440_t
Valid prediction for Augustus_model.g26832.t1
Valid prediction for snap_scaffold_16-snap.2120-T1
Valid prediction for GlimmerHMM_glimmerT_39911-T1
Couldn't classify 109512, 109526
Sorry, prediction pasa_asmbl_16515.p1 fails validation.
(AAA)	 AC	109512-109526	GT	CGG
(TTG)	 AG	109762-109834	GT	AGG
(AGT)	 AG	109937-110012	GT	CAG
(CCC)	 AG	110286-110361	GT	AGG
(AAC)	 AG	110477-110526	GT	CAG
(TGC)	 AG	110650-110707	GT	AGG
(GTT)	 AG	111014-111097	GT	AGG
(CAA)	 AG	111172-111303	GT	AAG
(CTT)	 AG	112204-112316	GT	AGG
(GGA)	 AG	112823-112859	GT	AAG
(GGA)	 AG	113262-113348	GT	AGG
(TAT)	 AG	113635-113730	GT	TGG
(CCG)	 AG	113953-114108	GT	TTG
(ACT)	 AG	114668-114757	GT	TGG
(AAT)	 AG	114948-115118	AA	GAA
-recovered pasa_asmbl_16515.p1, terminal, 114948, 115118
-recovered pasa_asmbl_16515.p1, internal, 109762, 109834
-recovered pasa_asmbl_16515.p1, internal, 109937, 110012
-recovered pasa_asmbl_16515.p1, internal, 110286, 110361
-recovered pasa_asmbl_16515.p1, internal, 110477, 110526
-recovered pasa_asmbl_16515.p1, internal, 110650, 110707
-recovered pasa_asmbl_16515.p1, internal, 111014, 111097
-recovered pasa_asmbl_16515.p1, internal, 111172, 111303
-recovered pasa_asmbl_16515.p1, internal, 112204, 112316
-recovered pasa_asmbl_16515.p1, internal, 112823, 112859
-recovered pasa_asmbl_16515.p1, internal, 113262, 113348
-recovered pasa_asmbl_16515.p1, internal, 113635, 113730
-recovered pasa_asmbl_16515.p1, internal, 113953, 114108
-recovered pasa_asmbl_16515.p1, internal, 114668, 114757
Valid prediction for Augustus_model.g26835.t1
Valid prediction for GeneMark_model.68444_t
Valid prediction for GeneMark_model.68436_t
Valid prediction for snap_scaffold_16-snap.2134-T1
Valid prediction for GeneMark_model.68409_t
Valid prediction for snap_scaffold_16-snap.2147-T1
Valid prediction for snap_scaffold_16-snap.2127-T1
Valid prediction for GlimmerHMM_glimmerT_39922-T1
Valid prediction for snap_scaffold_16-snap.2126-T1
Valid prediction for Augustus_model.g26821.t1
Valid prediction for Augustus_model.g26837.t1
Valid prediction for Augustus_model.g26829.t1
Valid prediction for snap_scaffold_16-snap.2135-T1
Valid prediction for GlimmerHMM_glimmerT_39912-T1
Valid prediction for snap_scaffold_16-snap.2143-T1
Valid prediction for CodingQuarry_transcript_20053-T1
Valid prediction for snap_scaffold_16-snap.2128-T1
Valid prediction for GlimmerHMM_glimmerT_39915-T1
Valid prediction for snap_scaffold_16-snap.2116-T1
Valid prediction for GeneMark_model.68407_t
Valid prediction for snap_scaffold_16-snap.2133-T1
Valid prediction for GeneMark_model.68413_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5310, rend_intergenic: 1545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22410, rend_intergenic: 10650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37885, rend_intergenic: 27057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73153, rend_intergenic: 71719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119572, rend_intergenic: 117202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147025, rend_intergenic: 133366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164764, rend_intergenic: 157272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170730, rend_intergenic: 168596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177946, rend_intergenic: 172582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 181099
-exon list size: 693


building trellis

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40.0    
40.1    
40.3    
40.4    
40.6    
40.7    
40.9    
41.0    
41.2    
41.3    
41.4    
41.6    
41.7    
41.9    
42.0    
42.2    
42.3    
42.4    
42.6    
42.7    
42.9    
43.0    
43.2    
43.3    
43.5    
43.6    
43.7    
43.9    
44.0    
44.2    
44.3    
44.5    
44.6    
44.7    
44.9    
45.0    
45.2    
45.3    
45.5    
45.6    
45.8    
45.9    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
46.9    
47.1    
47.2    
47.3    
47.5    
47.6    
47.8    
47.9    
48.1    
48.2    
48.3    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.4    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
51.9    
52.1    
52.2    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.1    
54.2    
54.4    
54.5    
54.7    
54.8    
55.0    
55.1    
55.3    
55.4    
55.5    
55.7    
55.8    
56.0    
56.1    
56.3    
56.4    
56.5    
56.7    
56.8    
57.0    
57.1    
57.3    
57.4    
57.6    
57.7    
57.8    
58.0    
58.1    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.3    
59.4    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.3    
61.4    
61.6    
61.7    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.9    
63.0    
63.2    
63.3    
63.5    
63.6    
63.7    
63.9    
64.0    
64.2    
64.3    
64.5    
64.6    
64.7    
64.9    
65.0    
65.2    
65.3    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.3    
67.5    
67.6    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.6    
69.8    
69.9    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.7    
71.8    
71.9    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.1    
74.2    
74.4    
74.5    
74.7    
74.8    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
76.0    
76.1    
76.3    
76.4    
76.5    
76.7    
76.8    
77.0    
77.1    
77.3    
77.4    
77.6    
77.7    
77.8    
78.0    
78.1    
78.3    
78.4    
78.6    
78.7    
78.8    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.6    
80.7    
80.9    
81.0    
81.2    
81.3    
81.4    
81.6    
81.7    
81.9    
82.0    
82.2    
82.3    
82.4    
82.6    
82.7    
82.9    
83.0    
83.2    
83.3    
83.5    
83.6    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.2    
85.3    
85.5    
85.6    
85.8    
85.9    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.3    
87.5    
87.6    
87.8    
87.9    
88.1    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.6    
89.8    
89.9    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
91.9    
92.1    
92.2    
92.4    
92.5    
92.7    
92.8    
92.9    
93.1    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
96.0    
96.1    
96.3    
96.4    
96.5    
96.7    
96.8    
97.0    
97.1    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.3    
98.4    
98.6    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 5310, rend_intergenic: 1545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22410, rend_intergenic: 10650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37885, rend_intergenic: 27057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73153, rend_intergenic: 71719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119572, rend_intergenic: 117202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147025, rend_intergenic: 133366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164764, rend_intergenic: 157272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170730, rend_intergenic: 168596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177946, rend_intergenic: 172582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support