-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1599

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 159, 270
Couldn't classify 2111, 2134
Sorry, prediction GeneMark_model.109522_t fails validation.
(GCG)	 AG	159-270	GT	TGG
(ACC)	 AG	367-459	GT	AGG
(CCC)	 AG	782-819	GT	CAG
(GGC)	 AG	881-952	GT	ATG
(GGC)	 AG	991-999	GT	AGG
(GCG)	 AG	1033-1173	GT	GGG
(GCT)	 AG	2061-2087	GT	AAG
(AGC)	 AG	2111-2134	GC	AAG
-recovered GeneMark_model.109522_t, internal, 159, 270
-recovered GeneMark_model.109522_t, internal, 367, 459
-recovered GeneMark_model.109522_t, internal, 782, 819
-recovered GeneMark_model.109522_t, internal, 881, 952
-recovered GeneMark_model.109522_t, internal, 991, 999
-recovered GeneMark_model.109522_t, internal, 1033, 1173
-recovered GeneMark_model.109522_t, internal, 2061, 2087
-recovered GeneMark_model.109522_t, internal, 2111, 2134
Couldn't classify 782, 1173
Sorry, prediction snap_scaffold_1599-snap.1-T1 fails validation.
(CCC)	 AG	782-1173	GT	GGG
(GCT)	 AG	2061-2139	GG	GAG
-recovered snap_scaffold_1599-snap.1-T1, terminal, 2061, 2139
-recovered snap_scaffold_1599-snap.1-T1, internal, 782, 1173

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2164
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support