-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1598

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 652, 755
Couldn't classify 1980, 2162
Sorry, prediction snap_scaffold_1598-snap.2-T1 fails validation.
(TGG)	 AG	652-755	GT	GGG
(CTC)	 AG	1980-2162	GT	AAG
-recovered snap_scaffold_1598-snap.2-T1, internal, 652, 755
-recovered snap_scaffold_1598-snap.2-T1, internal, 1980, 2162

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 780, 848
Couldn't classify 1882, 1928
Sorry, prediction GeneMark_model.109521_t fails validation.
(GGA)	 AG	780-848	GT	AGG
(GAG)	 AG	1543-1554	GC	AGG
(AGG)	 AG	1581-1607	GT	AGG
(AGG)	 AG	1633-1665	GT	AGG
(AGG)	 AG	1687-1740	GT	AGG
(GAC)	 AG	1774-1782	GT	AGG
(AGA)	 AG	1821-1856	GT	AGG
(AGG)	 AG	1882-1928	GT	TAG
-recovered GeneMark_model.109521_t, internal, 780, 848
-recovered GeneMark_model.109521_t, internal, 1543, 1554
-recovered GeneMark_model.109521_t, internal, 1581, 1607
-recovered GeneMark_model.109521_t, internal, 1633, 1665
-recovered GeneMark_model.109521_t, internal, 1687, 1740
-recovered GeneMark_model.109521_t, internal, 1774, 1782
-recovered GeneMark_model.109521_t, internal, 1821, 1856
-recovered GeneMark_model.109521_t, internal, 1882, 1928
Couldn't classify 1487, 1607
Sorry, prediction snap_scaffold_1598-snap.1-T1 fails validation.
(ATG)	 CC	10-87	GT	TGG
(TCT)	 AG	1487-1607	GT	AGG
-recovered snap_scaffold_1598-snap.1-T1, initial, 10, 87
-recovered snap_scaffold_1598-snap.1-T1, internal, 1487, 1607

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2156, rend_intergenic: 652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2165
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2156, rend_intergenic: 652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support