-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1595

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2114, 2164
Sorry, prediction GeneMark_model.109518_t fails validation.
(ATG)	 CC	1179-1333	GT	AGG
(GAG)	 AG	1356-1370	GT	AGG
(GAG)	 AG	1393-1404	GT	AGG
(AGG)	 AG	1431-1466	GT	AGG
(GGA)	 AG	1509-1556	GT	AGG
(AGA)	 AG	1589-1600	GT	AGG
(AAG)	 AG	1644-1652	GT	GAG
(AAA)	 AG	1689-1796	GT	AGG
(AGA)	 AG	1832-1882	GT	GAG
(CAG)	 AG	1922-1954	GT	GAG
(AGG)	 AG	1978-2091	GC	GAG
(CAG)	 AG	2114-2164	GC	GAG
-recovered GeneMark_model.109518_t, initial, 1179, 1333
-recovered GeneMark_model.109518_t, internal, 1356, 1370
-recovered GeneMark_model.109518_t, internal, 1393, 1404
-recovered GeneMark_model.109518_t, internal, 1431, 1466
-recovered GeneMark_model.109518_t, internal, 1509, 1556
-recovered GeneMark_model.109518_t, internal, 1589, 1600
-recovered GeneMark_model.109518_t, internal, 1644, 1652
-recovered GeneMark_model.109518_t, internal, 1689, 1796
-recovered GeneMark_model.109518_t, internal, 1832, 1882
-recovered GeneMark_model.109518_t, internal, 1922, 1954
-recovered GeneMark_model.109518_t, internal, 1978, 2091
-recovered GeneMark_model.109518_t, internal, 2114, 2164
Couldn't classify 45, 71
Sorry, prediction GeneMark_model.109519_t fails validation.
(AAG)	 AG	45-71	GT	CAG
(AGC)	 AG	95-115	GT	GAG
(AGA)	 AG	157-207	GT	GAG
(AGA)	 AG	251-385	GT	GAG
(ACA)	 AG	407-469	GT	GAG
(ACA)	 AG	541-661	GA	GAG
add_exon() Sorry, GeneMark_model.109519_t 251-385-terminal-1 is invalid.
-recovered GeneMark_model.109519_t, terminal, 251, 385
add_exon() Sorry, GeneMark_model.109519_t 407-469-terminal-1 is invalid.
-recovered GeneMark_model.109519_t, terminal, 407, 469
-recovered GeneMark_model.109519_t, terminal, 541, 661
-recovered GeneMark_model.109519_t, internal, 45, 71
-recovered GeneMark_model.109519_t, internal, 95, 115
-recovered GeneMark_model.109519_t, internal, 157, 207
-recovered GeneMark_model.109519_t, internal, 251, 385
-recovered GeneMark_model.109519_t, internal, 407, 469

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2173
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support