-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1590

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41752.t1
add_exon() Sorry, Augustus_model.g41752.t1 51-747-terminal-1 is invalid.
Valid prediction for snap_scaffold_1590-snap.1-T1
add_exon() Sorry, snap_scaffold_1590-snap.1-T1 51-747-terminal-1 is invalid.
Couldn't classify 193, 747
Sorry, prediction pasa_asmbl_15996.p1 fails validation.
(CAG)	 CC	193-747	AA	AGA
Valid prediction for GlimmerHMM_glimmerT_62729-T1
Couldn't classify 66, 531
Couldn't classify 1536, 1555
Sorry, prediction GeneMark_model.109515_t fails validation.
(GAG)	 AG	66-531	GT	TAG
(AAG)	 AG	575-693	GT	AAG
(GCG)	 AG	723-743	GT	ACG
(GCG)	 AG	1536-1555	GT	AGG
-recovered GeneMark_model.109515_t, internal, 66, 531
-recovered GeneMark_model.109515_t, internal, 575, 693
-recovered GeneMark_model.109515_t, internal, 723, 743
-recovered GeneMark_model.109515_t, internal, 1536, 1555

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1590-snap.2-T1
add_exon() Sorry, snap_scaffold_1590-snap.2-T1 570-759-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2180
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support