-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 134, 310
Couldn't classify 1745, 1830
Sorry, prediction snap_scaffold_1589-snap.1-T1 fails validation.
(CAG)	 AG	134-310	GT	TGG
(TCA)	 AG	1170-1257	GT	TGG
(GCT)	 AG	1745-1830	GT	ATG
-recovered snap_scaffold_1589-snap.1-T1, internal, 134, 310
-recovered snap_scaffold_1589-snap.1-T1, internal, 1170, 1257
-recovered snap_scaffold_1589-snap.1-T1, internal, 1745, 1830
Couldn't classify 2128, 2162
Sorry, prediction GeneMark_model.109514_t fails validation.
(ATG)	 GA	1679-1684	GT	CTG
(CCT)	 AG	1715-1830	GT	ATG
(AGG)	 AG	2024-2050	GT	GAG
(GAG)	 AG	2075-2104	GT	AGG
(GAA)	 AG	2128-2162	GT	AGG
-recovered GeneMark_model.109514_t, initial, 1679, 1684
-recovered GeneMark_model.109514_t, internal, 1715, 1830
-recovered GeneMark_model.109514_t, internal, 2024, 2050
-recovered GeneMark_model.109514_t, internal, 2075, 2104
-recovered GeneMark_model.109514_t, internal, 2128, 2162

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41751.t1
Couldn't classify 1844, 2038
Sorry, prediction GeneMark_model.109513_t fails validation.
(ATG)	 TG	997-1040	GT	ACG
(TAT)	 AG	1144-1155	GT	AGG
(GAA)	 AG	1179-1235	GT	GGG
(GAG)	 AG	1262-1336	GT	GGG
(GAG)	 AG	1361-1378	GT	GTG
(CAA)	 AG	1844-2038	GT	GAG
-recovered GeneMark_model.109513_t, initial, 997, 1040
-recovered GeneMark_model.109513_t, internal, 1144, 1155
-recovered GeneMark_model.109513_t, internal, 1179, 1235
-recovered GeneMark_model.109513_t, internal, 1262, 1336
-recovered GeneMark_model.109513_t, internal, 1361, 1378
-recovered GeneMark_model.109513_t, internal, 1844, 2038

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2182
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support