-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1588

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1572, 1713
Couldn't classify 2001, 2138
Sorry, prediction Augustus_model.g41750.t1 fails validation.
(ATC)	 AG	1572-1713	GT	AGG
(AGA)	 AG	2001-2138	GT	TGG
-recovered Augustus_model.g41750.t1, internal, 1572, 1713
-recovered Augustus_model.g41750.t1, internal, 2001, 2138
Couldn't classify 1572, 1713
Couldn't classify 2001, 2138
Sorry, prediction snap_scaffold_1588-snap.1-T1 fails validation.
(ATC)	 AG	1572-1713	GT	AGG
(AGA)	 AG	2001-2138	GT	TGG
-recovered snap_scaffold_1588-snap.1-T1, internal, 1572, 1713
-recovered snap_scaffold_1588-snap.1-T1, internal, 2001, 2138
Couldn't classify 976, 981
Couldn't classify 2003, 2138
Sorry, prediction GeneMark_model.109512_t fails validation.
(GTG)	 AG	976-981	GT	GGG
(AGG)	 AG	1014-1028	GT	GGG
(GGT)	 AG	1066-1078	GT	GGG
(ATC)	 AG	1572-1713	GT	AGG
(TGG)	 AG	1830-1888	GT	CGG
(ACG)	 AG	2003-2138	GT	TGG
-recovered GeneMark_model.109512_t, internal, 976, 981
-recovered GeneMark_model.109512_t, internal, 1014, 1028
-recovered GeneMark_model.109512_t, internal, 1066, 1078
-recovered GeneMark_model.109512_t, internal, 1572, 1713
-recovered GeneMark_model.109512_t, internal, 1830, 1888
-recovered GeneMark_model.109512_t, internal, 2003, 2138
Couldn't classify 1572, 1713
Sorry, prediction GlimmerHMM_glimmerT_62728-T1 fails validation.
(ATC)	 AG	1572-1713	GT	AGG
(TGG)	 AG	1830-1909	GC	AAG
-recovered GlimmerHMM_glimmerT_62728-T1, terminal, 1830, 1909
-recovered GlimmerHMM_glimmerT_62728-T1, internal, 1572, 1713
-recovered GlimmerHMM_glimmerT_62728-T1, internal, 1830, 1909

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2183
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support