-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1587

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62727-T1
Valid prediction for snap_scaffold_1587-snap.1-T1
add_exon() Sorry, snap_scaffold_1587-snap.1-T1 332-617-terminal-1 is invalid.
Couldn't classify 397, 450
Sorry, prediction GeneMark_model.109510_t fails validation.
(ACC)	 AG	397-450	GT	AAG
(GAG)	 AG	479-617	GA	GAG
-recovered GeneMark_model.109510_t, terminal, 479, 617
-recovered GeneMark_model.109510_t, internal, 397, 450
Valid prediction for snap_scaffold_1587-snap.2-T1
Valid prediction for GeneMark_model.109511_t
Valid prediction for GlimmerHMM_glimmerT_62726-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62726-T1 332-617-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2183
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support