-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1585

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 88, 154
Sorry, prediction GeneMark_model.109507_t fails validation.
(GGA)	 AG	88-154	GT	CTG
(GAG)	 AG	178-262	GT	ATG
(AAG)	 AG	442-458	GT	GAG
(AGT)	 AG	481-537	GT	GAG
(ATT)	 AG	564-609	GT	GTG
(CCC)	 AG	724-773	GT	TGG
(GGG)	 AG	1245-1268	GT	ATG
(TAG)	 AG	1289-1295	GA	GAG
-recovered GeneMark_model.109507_t, terminal, 1289, 1295
-recovered GeneMark_model.109507_t, internal, 88, 154
-recovered GeneMark_model.109507_t, internal, 178, 262
-recovered GeneMark_model.109507_t, internal, 442, 458
-recovered GeneMark_model.109507_t, internal, 481, 537
-recovered GeneMark_model.109507_t, internal, 564, 609
-recovered GeneMark_model.109507_t, internal, 724, 773
-recovered GeneMark_model.109507_t, internal, 1245, 1268

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2185
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support