-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1583

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 406, 450
Sorry, prediction GeneMark_model.109504_t fails validation.
(AGC)	 AG	406-450	GT	GTG
(AGC)	 AG	480-534	GT	ATG
(GGG)	 AG	675-830	GT	GTG
(GCA)	 AG	957-1052	GT	GCG
(TGC)	 AG	1152-1190	TG	AGT
-recovered GeneMark_model.109504_t, terminal, 1152, 1190
-recovered GeneMark_model.109504_t, internal, 406, 450
-recovered GeneMark_model.109504_t, internal, 480, 534
-recovered GeneMark_model.109504_t, internal, 675, 830
-recovered GeneMark_model.109504_t, internal, 957, 1052

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62723-T1
Valid prediction for snap_scaffold_1583-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62722-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2188
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support