-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1582

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62721-T1
Couldn't classify 72, 80
Couldn't classify 1249, 1336
Sorry, prediction GeneMark_model.109503_t fails validation.
(GGA)	 AG	72-80	GT	AGG
(AGA)	 AG	101-109	GT	GAG
(GCC)	 AG	250-348	GT	GGG
(AGG)	 AG	915-932	GT	GAG
(AGA)	 AG	953-1008	GT	GGG
(AGC)	 AG	1249-1336	GT	GAG
-recovered GeneMark_model.109503_t, terminal, 915, 932
-recovered GeneMark_model.109503_t, internal, 72, 80
-recovered GeneMark_model.109503_t, internal, 101, 109
-recovered GeneMark_model.109503_t, internal, 250, 348
-recovered GeneMark_model.109503_t, internal, 915, 932
-recovered GeneMark_model.109503_t, internal, 953, 1008
-recovered GeneMark_model.109503_t, internal, 1249, 1336

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1858, 1923
Sorry, prediction Augustus_model.g41748.t1 fails validation.
(ATG)	 AC	1299-1339	GT	TGG
(CGA)	 AG	1582-1624	GT	AGG
(CTG)	 AG	1858-1923	GT	CGG
-recovered Augustus_model.g41748.t1, initial, 1299, 1339
-recovered Augustus_model.g41748.t1, internal, 1582, 1624
-recovered Augustus_model.g41748.t1, internal, 1858, 1923
Couldn't classify 1858, 1923
Sorry, prediction snap_scaffold_1582-snap.1-T1 fails validation.
(ATG)	 TG	811-841	GT	AAG
(TGG)	 AG	1294-1339	GT	TGG
(CGA)	 AG	1582-1624	GT	AGG
(CTG)	 AG	1858-1923	GT	CGG
-recovered snap_scaffold_1582-snap.1-T1, initial, 811, 841
-recovered snap_scaffold_1582-snap.1-T1, internal, 1294, 1339
-recovered snap_scaffold_1582-snap.1-T1, internal, 1582, 1624
-recovered snap_scaffold_1582-snap.1-T1, internal, 1858, 1923

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2188
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support