-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1581

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 760, 815
Sorry, prediction GeneMark_model.109501_t fails validation.
(AGT)	 AG	760-815	GT	CGG
(ACG)	 AG	932-1088	GT	CAG
(AGA)	 AG	1272-1310	GT	GAG
(GGG)	 AG	1334-1367	AG	GAA
-recovered GeneMark_model.109501_t, terminal, 1334, 1367
-recovered GeneMark_model.109501_t, internal, 760, 815
-recovered GeneMark_model.109501_t, internal, 932, 1088
-recovered GeneMark_model.109501_t, internal, 1272, 1310

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 121, 214
Sorry, prediction Augustus_model.g41747.t1 fails validation.
(GGA)	 AG	121-214	GT	CAG
(AGG)	 AG	367-462	GT	AGG
(CCT)	 AG	765-782	TC	AGT
-recovered Augustus_model.g41747.t1, terminal, 765, 782
-recovered Augustus_model.g41747.t1, internal, 121, 214
-recovered Augustus_model.g41747.t1, internal, 367, 462
Couldn't classify 56, 200
Couldn't classify 239, 462
Sorry, prediction snap_scaffold_1581-snap.1-T1 fails validation.
(ATT)	 AG	56-200	GT	AGG
(GAG)	 AG	239-462	GT	AGG
add_exon() Sorry, snap_scaffold_1581-snap.1-T1 56-200-terminal-3 is invalid.
-recovered snap_scaffold_1581-snap.1-T1, terminal, 56, 200
-recovered snap_scaffold_1581-snap.1-T1, internal, 56, 200
-recovered snap_scaffold_1581-snap.1-T1, internal, 239, 462
Couldn't classify 56, 200
Sorry, prediction GeneMark_model.109502_t fails validation.
(ATT)	 AG	56-200	GT	AGG
(GAG)	 AG	239-306	GT	CGG
(AGG)	 AG	367-462	GT	AGG
(TGA)	 AG	699-701	AT	GAA
add_exon() Sorry, GeneMark_model.109502_t 56-200-terminal-3 is invalid.
-recovered GeneMark_model.109502_t, terminal, 56, 200
-recovered GeneMark_model.109502_t, terminal, 699, 701
-recovered GeneMark_model.109502_t, internal, 56, 200
-recovered GeneMark_model.109502_t, internal, 239, 306
-recovered GeneMark_model.109502_t, internal, 367, 462

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2191
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support