-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1579

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 14, 43
Sorry, prediction GeneMark_model.109499_t fails validation.
(GAG)	 AG	14-43	GT	AGG
(CGA)	 AG	68-212	AC	GAA
-recovered GeneMark_model.109499_t, terminal, 68, 212
-recovered GeneMark_model.109499_t, internal, 14, 43
Couldn't classify 1986, 2104
Sorry, prediction snap_scaffold_1579-snap.1-T1 fails validation.
(ATG)	 AA	1571-1669	GT	AGG
(AGA)	 AG	1986-2104	GT	AAG
-recovered snap_scaffold_1579-snap.1-T1, initial, 1571, 1669
-recovered snap_scaffold_1579-snap.1-T1, internal, 1986, 2104
Couldn't classify 1986, 2104
Sorry, prediction Augustus_model.g41745.t1 fails validation.
(ATG)	 CA	1559-1669	GT	AGG
(AGA)	 AG	1986-2104	GT	AAG
-recovered Augustus_model.g41745.t1, initial, 1559, 1669
-recovered Augustus_model.g41745.t1, internal, 1986, 2104
Couldn't classify 1986, 2104
Sorry, prediction GeneMark_model.109498_t fails validation.
(ATG)	 AA	1571-1674	GT	AGG
(GGA)	 AG	1700-1726	GT	GGG
(TCC)	 AG	1756-1816	GT	TGG
(TAC)	 AG	1912-1941	GT	CAG
(AGA)	 AG	1986-2104	GT	AAG
-recovered GeneMark_model.109498_t, initial, 1571, 1674
-recovered GeneMark_model.109498_t, internal, 1700, 1726
-recovered GeneMark_model.109498_t, internal, 1756, 1816
-recovered GeneMark_model.109498_t, internal, 1912, 1941
-recovered GeneMark_model.109498_t, internal, 1986, 2104

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2191
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support