-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1578

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1665, 1869
Sorry, prediction GlimmerHMM_glimmerT_62719-T1 fails validation.
(ATG)	 CC	1491-1575	GT	AGG
(ACG)	 AG	1665-1869	GT	AGG
-recovered GlimmerHMM_glimmerT_62719-T1, initial, 1491, 1575
-recovered GlimmerHMM_glimmerT_62719-T1, internal, 1665, 1869
Couldn't classify 1665, 1869
Sorry, prediction GeneMark_model.109497_t fails validation.
(ATG)	 CC	1491-1575	GT	AGG
(ACG)	 AG	1665-1869	GT	AGG
-recovered GeneMark_model.109497_t, initial, 1491, 1575
-recovered GeneMark_model.109497_t, internal, 1665, 1869
Couldn't classify 1487, 1575
Sorry, prediction Augustus_model.g41744.t1 fails validation.
(CGC)	 AG	1487-1575	GT	AGG
(ACG)	 AG	1665-1873	GG	AAG
-recovered Augustus_model.g41744.t1, terminal, 1665, 1873
-recovered Augustus_model.g41744.t1, internal, 1487, 1575
Couldn't classify 1665, 1869
Sorry, prediction snap_scaffold_1578-snap.2-T1 fails validation.
(ATG)	 AG	321-343	GT	AGG
(CGC)	 AG	1487-1575	GT	AGG
(ACG)	 AG	1665-1869	GT	AGG
-recovered snap_scaffold_1578-snap.2-T1, initial, 321, 343
-recovered snap_scaffold_1578-snap.2-T1, internal, 321, 343
-recovered snap_scaffold_1578-snap.2-T1, internal, 1487, 1575
-recovered snap_scaffold_1578-snap.2-T1, internal, 1665, 1869

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109496_t
Couldn't classify 1983, 2102
Sorry, prediction snap_scaffold_1578-snap.1-T1 fails validation.
(ATG)	 AG	308-464	GT	GGG
(ACT)	 AG	1983-2102	GT	GGG
-recovered snap_scaffold_1578-snap.1-T1, initial, 308, 464
-recovered snap_scaffold_1578-snap.1-T1, internal, 308, 464
-recovered snap_scaffold_1578-snap.1-T1, internal, 1983, 2102

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1885, rend_intergenic: 321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2192
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1885, rend_intergenic: 321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support