-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1577

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 346, 444
Couldn't classify 1846, 1970
Sorry, prediction GeneMark_model.109495_t fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-961	GT	CAG
(GGG)	 AG	1105-1119	GT	AGG
(AGA)	 AG	1146-1283	GT	GGG
(AGA)	 AG	1309-1428	GT	GGG
(GGG)	 AG	1454-1471	GT	GAG
(GGT)	 AG	1501-1563	GT	AGG
(GGT)	 AG	1846-1970	GT	TGG
-recovered GeneMark_model.109495_t, internal, 346, 444
-recovered GeneMark_model.109495_t, internal, 840, 961
-recovered GeneMark_model.109495_t, internal, 1105, 1119
-recovered GeneMark_model.109495_t, internal, 1146, 1283
-recovered GeneMark_model.109495_t, internal, 1309, 1428
-recovered GeneMark_model.109495_t, internal, 1454, 1471
-recovered GeneMark_model.109495_t, internal, 1501, 1563
-recovered GeneMark_model.109495_t, internal, 1846, 1970
Couldn't classify 346, 444
Couldn't classify 1846, 1970
Sorry, prediction Augustus_model.g41743.t1 fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-1070	GT	TGG
(TCA)	 AG	1711-1736	GT	AGG
(GGT)	 AG	1846-1970	GT	TGG
-recovered Augustus_model.g41743.t1, internal, 346, 444
-recovered Augustus_model.g41743.t1, internal, 840, 1070
-recovered Augustus_model.g41743.t1, internal, 1711, 1736
-recovered Augustus_model.g41743.t1, internal, 1846, 1970
Couldn't classify 346, 444
Sorry, prediction GlimmerHMM_glimmerT_62718-T1 fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-1031	GT	TGG
(GGT)	 AG	1846-1974	GG	GAG
-recovered GlimmerHMM_glimmerT_62718-T1, terminal, 1846, 1974
-recovered GlimmerHMM_glimmerT_62718-T1, internal, 346, 444
-recovered GlimmerHMM_glimmerT_62718-T1, internal, 840, 1031
Couldn't classify 346, 444
Couldn't classify 1846, 1970
Sorry, prediction snap_scaffold_1577-snap.1-T1 fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-1283	GT	GGG
(TCA)	 AG	1711-1736	GT	AGG
(GGT)	 AG	1846-1970	GT	TGG
-recovered snap_scaffold_1577-snap.1-T1, internal, 346, 444
-recovered snap_scaffold_1577-snap.1-T1, internal, 840, 1283
-recovered snap_scaffold_1577-snap.1-T1, internal, 1711, 1736
-recovered snap_scaffold_1577-snap.1-T1, internal, 1846, 1970

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2195
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support