-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1575

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 93
Couldn't classify 1990, 2074
Sorry, prediction Augustus_model.g41741.t1 fails validation.
(AGG)	 TC	1-93	GT	AGG
(TCA)	 AG	1190-1398	GT	AGG
(GTG)	 AG	1740-1885	GT	GGG
(AAC)	 AG	1990-2074	GT	CTG
-recovered Augustus_model.g41741.t1, internal, 1190, 1398
-recovered Augustus_model.g41741.t1, internal, 1740, 1885
-recovered Augustus_model.g41741.t1, internal, 1990, 2074
Couldn't classify 1199, 1398
Couldn't classify 1990, 2074
Sorry, prediction snap_scaffold_1575-snap.1-T1 fails validation.
(GTG)	 AG	1199-1398	GT	AGG
(GTG)	 AG	1740-1885	GT	GGG
(AAC)	 AG	1990-2074	GT	CTG
-recovered snap_scaffold_1575-snap.1-T1, internal, 1199, 1398
-recovered snap_scaffold_1575-snap.1-T1, internal, 1740, 1885
-recovered snap_scaffold_1575-snap.1-T1, internal, 1990, 2074
Valid prediction for GlimmerHMM_glimmerT_62717-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 180, 336
Sorry, prediction GeneMark_model.109493_t fails validation.
(GCC)	 AG	180-336	GT	ACG
(TGG)	 AG	363-448	GT	CTG
(GGA)	 AG	476-607	GT	GGG
(AAA)	 AG	662-775	GT	AAG
(GAG)	 AG	814-891	GT	TGG
(GGA)	 AG	1037-1045	GT	GGG
(GGA)	 AG	1069-1152	GT	GGG
(GAG)	 AG	1181-1328	AT	AAA
-recovered GeneMark_model.109493_t, terminal, 1181, 1328
-recovered GeneMark_model.109493_t, internal, 180, 336
-recovered GeneMark_model.109493_t, internal, 363, 448
-recovered GeneMark_model.109493_t, internal, 476, 607
-recovered GeneMark_model.109493_t, internal, 662, 775
-recovered GeneMark_model.109493_t, internal, 814, 891
-recovered GeneMark_model.109493_t, internal, 1037, 1045
-recovered GeneMark_model.109493_t, internal, 1069, 1152

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2196
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support